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diff --git a/doc/cnm.md b/doc/cnm.md new file mode 100644 index 0000000..290c764 --- /dev/null +++ b/doc/cnm.md @@ -0,0 +1,99 @@ +cnm(1) -- Find communities using greedy modularity optimisation +====== + +## SYNOPSIS + +`cnm` <graph_in> + +## DESCRIPTION + +`cnm` finds the communities in <graph_in> using the greedy modularity +optimisation algorithm proposed by Clauset, Newman and Moore. The +program prints on STDOUT the partition corresponding to the highest +value of the modularity function, and reports on STDERR the number of +communities and the corresponding value of modularity at each +step. The algorithm is quite eficient and thus suitable to find +communities in large graphs. + +## PARAMETERS + +* <graph_in>: + undirected input graph (edge list). If is equal to `-` (dash), read + the edge list from STDIN. + +## OUTPUT + +The program prints on STDOUT the partition corresponding to the +highest value of modularity, in the format: + + ## nc: NUM_COMM Q_max: Q_MAX + node_1 comm_1 + node_2 comm_2 + node_3 comm_3 + ... + +where `comm_i` is the community to which `node_i` belongs. The first +output line reports the number of communities `NUM_COMM` and the +corresponding value of modularity `Q_MAX` of the partition. + +The program prints on STDERR the number of communities and the +corresponding value of modularity at each step, in the format: + + nc_1 Q_1 + nc_2 Q_2 + nc_3 Q_3 + .... + +where `nc_i` is the number of communities after the i-th marge and +`Q_i` is the corresponding value of modularity. Since the algorithm +merges two communities at each step, the values `nc_1`, `nc_2`, +`nc_3`, etc. will be equal to `N-1`, `N-2`, `N-3`, etc. + +## EXAMPLES + +We can use `cnm` to find communities in the graph +`karate_club_unweighted.net` (Zachary Karate Club network) with the +command: + + $ cnm karate_club_unweighted.net 2> karate_cnm_trace + ### nc: 3 Q_max: 0.380671 + 0 16 + 1 2 + 2 2 + 3 2 + 4 16 + 5 16 + 6 16 + ... + 30 26 + 31 26 + 32 26 + 33 26 + $ + +The program has found a partition with 3 communities corrisponding to +a modularity Q=0.380671. Notice that node 0, 4, 5, 6 are in community +16, node 1, 2, 3 are in community 2, and so forth. In this example, +we have chosen to save the information about number of communities and +modularity at each step in the file `karate_cnm_trace`. + +## SEE ALSO + +modularity(1), gn(1), label_prop(1) + +## REFERENCES + +* A\. Clauset, M. E. J. Newman, and C. Moore. "Finding community + structure in very large networks". Phys. Rev. E 70 (2004), 066111. + +* V\. Latora, V. Nicosia, G. Russo, "Complex Networks: Principles, + Methods and Applications", Appendix 18, Cambridge University Press + (2017) + +* V\. Latora, V. Nicosia, G. Russo, "Complex Networks: Principles, + Methods and Applications", Chapter 9, Cambridge University Press + (2017) + +## AUTHORS + +(c) Vincenzo 'KatolaZ' Nicosia 2009-2017 `<v.nicosia@qmul.ac.uk>`. |