First commit of MAMMULT code

1 files changed, 47 insertions, 0 deletions

diff --git a/structure/metrics/avg_edge_overlap.py b/structure/metrics/avg_edge_overlap.py
new file mode 100644
index 0000000..e68fd8b
--- /dev/null
+++ b/structure/metrics/avg_edge_overlap.py
@@ -0,0 +1,47 @@
+####
+##
+## Compute the average edge overlap of a multiplex, i.e. the average
+## number of layers in which an edge is present
+##
+##
+
+import sys
+
+
+if len(sys.argv) < 2:
+    print "Usage: %s <layer1> [<layer2>...]" % sys.argv[0]
+    sys.exit(1)
+
+max_N = -1
+
+all_edges = {}
+
+layer_ID = -1
+
+for layer in sys.argv[1:]:
+    layer_ID += 1
+    with open(layer, "r") as lines:
+        for l in lines:
+            if l[0] == "#":
+                continue
+            s, d = [int(x) for x in l.strip(" \n").split(" ")[:2]]
+            if s > d:
+                tmp = s
+                s = d
+                d = tmp
+            if (s,d) in all_edges:
+                all_edges[(s,d)].append(layer_ID)
+            else:
+                all_edges[(s,d)] = [layer_ID]
+                
+K = len(all_edges.keys())
+M = len(sys.argv) - 1
+
+numer = 0
+
+for k in all_edges.keys():
+    numer += len(set(all_edges[(k)]))
+
+
+print 1.0 * numer / K, 1.0 * numer / (K * M)
+