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Diffstat (limited to 'doc')
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diff --git a/doc/html/mammult_doc.html b/doc/html/mammult_doc.html index 416f275..48d8c6c 100644 --- a/doc/html/mammult_doc.html +++ b/doc/html/mammult_doc.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -36,258 +36,260 @@ class="cmr-12"> October 2015</span></div> <div class="tableofcontents"> - <span class="chapterToc" >1 <a -href="mammult_docch1.html#x2-10001" id="QQ2-2-1">Structural descriptors</a></span> + <span class="likechapterToc" ><a +href="mammult_docli1.html#x2-1000" id="QQ2-2-1">Contents</a></span> +<br /> <span class="chapterToc" >1 <a +href="mammult_docch1.html#x3-20001" id="QQ2-3-2">Structural descriptors</a></span> <br />  <span class="sectionToc" >1.1 <a -href="mammult_docse1.html#x3-20001.1" id="QQ2-3-2">Basic node, edge, and layer properties</a></span> +href="mammult_docse1.html#x4-30001.1" id="QQ2-4-3">Basic node, edge, and layer properties</a></span> <br />   <span class="subsectionToc" >1.1.1 <a -href="mammult_docsu1.html#x4-30001.1.1" id="QQ2-4-3">Node and layer activity</a></span> +href="mammult_docsu1.html#x5-40001.1.1" id="QQ2-5-4">Node and layer activity</a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu2.html#x5-40001.1.1" id="QQ2-5-4"><span +href="mammult_docsu2.html#x6-50001.1.1" id="QQ2-6-5"><span class="cmtt-10x-x-109">node</span><span class="cmtt-10x-x-109">_activity.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu3.html#x6-50001.1.1" id="QQ2-6-5"><span +href="mammult_docsu3.html#x7-60001.1.1" id="QQ2-7-6"><span class="cmtt-10x-x-109">layer</span><span class="cmtt-10x-x-109">_activity.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu4.html#x7-60001.1.1" id="QQ2-7-6"><span +href="mammult_docsu4.html#x8-70001.1.1" id="QQ2-8-7"><span class="cmtt-10x-x-109">node</span><span class="cmtt-10x-x-109">_activity</span><span class="cmtt-10x-x-109">_vectors.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu5.html#x8-70001.1.1" id="QQ2-8-7"><span +href="mammult_docsu5.html#x9-80001.1.1" id="QQ2-9-8"><span class="cmtt-10x-x-109">layer</span><span class="cmtt-10x-x-109">_activity</span><span class="cmtt-10x-x-109">_vectors.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu6.html#x9-80001.1.1" id="QQ2-9-8"><span +href="mammult_docsu6.html#x10-90001.1.1" id="QQ2-10-9"><span class="cmtt-10x-x-109">multiplexity.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu7.html#x10-90001.1.1" id="QQ2-10-9"><span +href="mammult_docsu7.html#x11-100001.1.1" id="QQ2-11-10"><span class="cmtt-10x-x-109">hamming</span><span class="cmtt-10x-x-109">_dist.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu8.html#x11-100001.1.1" id="QQ2-11-10"><span +href="mammult_docsu8.html#x12-110001.1.1" id="QQ2-12-11"><span class="cmtt-10x-x-109">node</span><span class="cmtt-10x-x-109">_degree</span><span class="cmtt-10x-x-109">_vectors.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu9.html#x12-110001.1.1" id="QQ2-12-11"><span +href="mammult_docsu9.html#x13-120001.1.1" id="QQ2-13-12"><span class="cmtt-10x-x-109">degs</span><span class="cmtt-10x-x-109">_to</span><span class="cmtt-10x-x-109">_binary.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu10.html#x13-120001.1.1" id="QQ2-13-12"><span +href="mammult_docsu10.html#x14-130001.1.1" id="QQ2-14-13"><span class="cmtt-10x-x-109">degs</span><span class="cmtt-10x-x-109">_to</span><span class="cmtt-10x-x-109">_activity</span><span class="cmtt-10x-x-109">_overlap.py</span></a></span> <br />   <span class="subsectionToc" >1.1.2 <a -href="mammult_docsu11.html#x14-130001.1.2" id="QQ2-14-13">Layer aggregation</a></span> +href="mammult_docsu11.html#x15-140001.1.2" id="QQ2-15-14">Layer aggregation</a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu12.html#x15-140001.1.2" id="QQ2-15-14"><span +href="mammult_docsu12.html#x16-150001.1.2" id="QQ2-16-15"><span class="cmtt-10x-x-109">aggregate</span><span class="cmtt-10x-x-109">_layers</span><span class="cmtt-10x-x-109">_w.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu13.html#x16-150001.1.2" id="QQ2-16-15"><span +href="mammult_docsu13.html#x17-160001.1.2" id="QQ2-17-16"><span class="cmtt-10x-x-109">intersect</span><span class="cmtt-10x-x-109">_layers.py</span></a></span> <br />   <span class="subsectionToc" >1.1.3 <a -href="mammult_docsu14.html#x17-160001.1.3" id="QQ2-17-16">Node degree, participation coefficient, cartography</a></span> +href="mammult_docsu14.html#x18-170001.1.3" id="QQ2-18-17">Node degree, participation coefficient, cartography</a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu15.html#x18-170001.1.3" id="QQ2-18-17"><span +href="mammult_docsu15.html#x19-180001.1.3" id="QQ2-19-18"><span class="cmtt-10x-x-109">overlap</span><span class="cmtt-10x-x-109">_degree.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu16.html#x19-180001.1.3" id="QQ2-19-18"><span +href="mammult_docsu16.html#x20-190001.1.3" id="QQ2-20-19"><span class="cmtt-10x-x-109">cartography</span><span class="cmtt-10x-x-109">_from</span><span class="cmtt-10x-x-109">_layers.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu17.html#x20-190001.1.3" id="QQ2-20-19"><span +href="mammult_docsu17.html#x21-200001.1.3" id="QQ2-21-20"><span class="cmtt-10x-x-109">cartography</span><span class="cmtt-10x-x-109">_from</span><span class="cmtt-10x-x-109">_deg</span><span class="cmtt-10x-x-109">_vectors.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu18.html#x21-200001.1.3" id="QQ2-21-20"><span +href="mammult_docsu18.html#x22-210001.1.3" id="QQ2-22-21"><span class="cmtt-10x-x-109">cartography</span><span class="cmtt-10x-x-109">_from</span><span class="cmtt-10x-x-109">_columns.py</span></a></span> <br />   <span class="subsectionToc" >1.1.4 <a -href="mammult_docsu19.html#x22-210001.1.4" id="QQ2-22-21">Edge overlap, reinforcement</a></span> +href="mammult_docsu19.html#x23-220001.1.4" id="QQ2-23-22">Edge overlap, reinforcement</a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu20.html#x23-220001.1.4" id="QQ2-23-22"><span +href="mammult_docsu20.html#x24-230001.1.4" id="QQ2-24-23"><span class="cmtt-10x-x-109">edge</span><span class="cmtt-10x-x-109">_overlap.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu21.html#x24-230001.1.4" id="QQ2-24-23"><span +href="mammult_docsu21.html#x25-240001.1.4" id="QQ2-25-24"><span class="cmtt-10x-x-109">avg</span><span class="cmtt-10x-x-109">_edge</span><span class="cmtt-10x-x-109">_overlap.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu22.html#x25-240001.1.4" id="QQ2-25-24"><span +href="mammult_docsu22.html#x26-250001.1.4" id="QQ2-26-25"><span class="cmtt-10x-x-109">reinforcement.py</span></a></span> <br />  <span class="sectionToc" >1.2 <a -href="mammult_docse2.html#x26-250001.2" id="QQ2-26-25">Inter-layer degree correlations</a></span> +href="mammult_docse2.html#x27-260001.2" id="QQ2-27-26">Inter-layer degree correlations</a></span> <br />   <span class="subsectionToc" >1.2.1 <a -href="mammult_docsu23.html#x27-260001.2.1" id="QQ2-27-26">Node ranking</a></span> +href="mammult_docsu23.html#x28-270001.2.1" id="QQ2-28-27">Node ranking</a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu24.html#x28-270001.2.1" id="QQ2-28-27"><span +href="mammult_docsu24.html#x29-280001.2.1" id="QQ2-29-28"><span class="cmtt-10x-x-109">rank</span><span class="cmtt-10x-x-109">_nodes.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu25.html#x29-280001.2.1" id="QQ2-29-28"><span +href="mammult_docsu25.html#x30-290001.2.1" id="QQ2-30-29"><span class="cmtt-10x-x-109">rank</span><span class="cmtt-10x-x-109">_nodes</span><span class="cmtt-10x-x-109">_thresh.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu26.html#x30-290001.2.1" id="QQ2-30-29"><span +href="mammult_docsu26.html#x31-300001.2.1" id="QQ2-31-30"><span class="cmtt-10x-x-109">rank</span><span class="cmtt-10x-x-109">_occurrence.py</span></a></span> <br />   <span class="subsectionToc" >1.2.2 <a -href="mammult_docsu27.html#x31-300001.2.2" id="QQ2-31-30">Interlayer degree correlation coefficients</a></span> +href="mammult_docsu27.html#x32-310001.2.2" id="QQ2-32-31">Interlayer degree correlation coefficients</a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu28.html#x32-310001.2.2" id="QQ2-32-31"><span +href="mammult_docsu28.html#x33-320001.2.2" id="QQ2-33-32"><span class="cmtt-10x-x-109">compute</span><span class="cmtt-10x-x-109">_pearson.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu29.html#x33-320001.2.2" id="QQ2-33-32"><span +href="mammult_docsu29.html#x34-330001.2.2" id="QQ2-34-33"><span class="cmtt-10x-x-109">compute</span><span class="cmtt-10x-x-109">_rho.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu30.html#x34-330001.2.2" id="QQ2-34-33"><span +href="mammult_docsu30.html#x35-340001.2.2" id="QQ2-35-34"><span class="cmtt-10x-x-109">compute</span><span class="cmtt-10x-x-109">_tau.py</span></a></span> <br />   <span class="subsectionToc" >1.2.3 <a -href="mammult_docsu31.html#x35-340001.2.3" id="QQ2-35-34">Interlayer degree correlation functions</a></span> +href="mammult_docsu31.html#x36-350001.2.3" id="QQ2-36-35">Interlayer degree correlation functions</a></span> + + + <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu32.html#x36-350001.2.3" id="QQ2-36-35"><span +href="mammult_docsu32.html#x37-360001.2.3" id="QQ2-37-36"><span class="cmtt-10x-x-109">dump</span><span class="cmtt-10x-x-109">_k</span><span class="cmtt-10x-x-109">_q</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu33.html#x37-360001.2.3" id="QQ2-37-36"><span +href="mammult_docsu33.html#x38-370001.2.3" id="QQ2-38-37"><span class="cmtt-10x-x-109">knn</span><span class="cmtt-10x-x-109">_q</span><span class="cmtt-10x-x-109">_from</span><span class="cmtt-10x-x-109">_layers.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu34.html#x38-370001.2.3" id="QQ2-38-37"><span +href="mammult_docsu34.html#x39-380001.2.3" id="QQ2-39-38"><span class="cmtt-10x-x-109">knn</span><span class="cmtt-10x-x-109">_q</span><span class="cmtt-10x-x-109">_from</span><span class="cmtt-10x-x-109">_degrees.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu35.html#x39-380001.2.3" id="QQ2-39-38"><span +href="mammult_docsu35.html#x40-390001.2.3" id="QQ2-40-39"><span class="cmtt-10x-x-109">fit</span><span class="cmtt-10x-x-109">_knn</span></a></span> <br /> <span class="chapterToc" >2 <a -href="mammult_docch2.html#x40-390002" id="QQ2-40-39">Models of multi-layer networks</a></span> +href="mammult_docch2.html#x41-400002" id="QQ2-41-40">Models of multi-layer networks</a></span> <br />  <span class="sectionToc" >2.1 <a -href="mammult_docse3.html#x41-400002.1" id="QQ2-41-40">Null models</a></span> +href="mammult_docse3.html#x42-410002.1" id="QQ2-42-41">Null models</a></span> <br />   <span class="subsectionToc" >2.1.1 <a -href="mammult_docsu36.html#x42-410002.1.1" id="QQ2-42-41">Null-models of node and layer activity</a></span> +href="mammult_docsu36.html#x43-420002.1.1" id="QQ2-43-42">Null-models of node and layer activity</a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu37.html#x43-420002.1.1" id="QQ2-43-42"><span +href="mammult_docsu37.html#x44-430002.1.1" id="QQ2-44-43"><span class="cmtt-10x-x-109">model</span><span class="cmtt-10x-x-109">_hypergeometric.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu38.html#x44-430002.1.1" id="QQ2-44-43"><span +href="mammult_docsu38.html#x45-440002.1.1" id="QQ2-45-44"><span class="cmtt-10x-x-109">model</span><span class="cmtt-10x-x-109">_MDM.py</span></a></span> - - - <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu39.html#x45-440002.1.1" id="QQ2-45-44"><span +href="mammult_docsu39.html#x46-450002.1.1" id="QQ2-46-45"><span class="cmtt-10x-x-109">model</span><span class="cmtt-10x-x-109">_MSM.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu40.html#x46-450002.1.1" id="QQ2-46-45"><span +href="mammult_docsu40.html#x47-460002.1.1" id="QQ2-47-46"><span class="cmtt-10x-x-109">model</span><span class="cmtt-10x-x-109">_layer</span><span class="cmtt-10x-x-109">_growth.py</span></a></span> <br />  <span class="sectionToc" >2.2 <a -href="mammult_docse4.html#x47-460002.2" id="QQ2-47-46">Growing multiplex networks</a></span> +href="mammult_docse4.html#x48-470002.2" id="QQ2-48-47">Growing multiplex networks</a></span> <br />   <span class="subsectionToc" >2.2.1 <a -href="mammult_docsu41.html#x48-470002.2.1" id="QQ2-48-47">Linear preferential attachment</a></span> +href="mammult_docsu41.html#x49-480002.2.1" id="QQ2-49-48">Linear preferential attachment</a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu42.html#x49-480002.2.1" id="QQ2-49-48"><span +href="mammult_docsu42.html#x50-490002.2.1" id="QQ2-50-49"><span class="cmtt-10x-x-109">nibilab</span><span class="cmtt-10x-x-109">_linear</span><span class="cmtt-10x-x-109">_delta</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu43.html#x50-490002.2.1" id="QQ2-50-49"><span +href="mammult_docsu43.html#x51-500002.2.1" id="QQ2-51-50"><span class="cmtt-10x-x-109">nibilab</span><span class="cmtt-10x-x-109">_linear</span><span class="cmtt-10x-x-109">_delay</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu44.html#x51-500002.2.1" id="QQ2-51-50"><span +href="mammult_docsu44.html#x52-510002.2.1" id="QQ2-52-51"><span class="cmtt-10x-x-109">nibilab</span><span class="cmtt-10x-x-109">_linear</span><span class="cmtt-10x-x-109">_delay</span><span class="cmtt-10x-x-109">_mix</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu45.html#x52-510002.2.1" id="QQ2-52-51"><span +href="mammult_docsu45.html#x53-520002.2.1" id="QQ2-53-52"><span class="cmtt-10x-x-109">nibilab</span><span class="cmtt-10x-x-109">_linear</span><span class="cmtt-10x-x-109">_random</span><span class="cmtt-10x-x-109">_times</span></a></span> <br />   <span class="subsectionToc" >2.2.2 <a -href="mammult_docsu46.html#x53-520002.2.2" id="QQ2-53-52">Non-linear preferential attachment</a></span> +href="mammult_docsu46.html#x54-530002.2.2" id="QQ2-54-53">Non-linear preferential attachment</a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu47.html#x54-530002.2.2" id="QQ2-54-53"><span +href="mammult_docsu47.html#x55-540002.2.2" id="QQ2-55-54"><span class="cmtt-10x-x-109">nibilab</span><span class="cmtt-10x-x-109">_nonlinear</span></a></span> <br />   <span class="subsectionToc" >2.2.3 <a -href="mammult_docsu48.html#x55-540002.2.3" id="QQ2-55-54">Utilities</a></span> +href="mammult_docsu48.html#x56-550002.2.3" id="QQ2-56-55">Utilities</a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu49.html#x56-550002.2.3" id="QQ2-56-55"><span +href="mammult_docsu49.html#x57-560002.2.3" id="QQ2-57-56"><span class="cmtt-10x-x-109">node</span><span class="cmtt-10x-x-109">_deg</span><span class="cmtt-10x-x-109">_over</span><span class="cmtt-10x-x-109">_time.py</span></a></span> <br />  <span class="sectionToc" >2.3 <a -href="mammult_docse5.html#x57-560002.3" id="QQ2-57-56">Multiplex networks with inter-layer degree correlations</a></span> +href="mammult_docse5.html#x58-570002.3" id="QQ2-58-57">Multiplex networks with inter-layer degree correlations</a></span> <br />   <span class="subsectionToc" >2.3.1 <a -href="mammult_docsu50.html#x58-570002.3.1" id="QQ2-58-57">Models based on simulated annealing</a></span> +href="mammult_docsu50.html#x59-580002.3.1" id="QQ2-59-58">Models based on simulated annealing</a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu51.html#x59-580002.3.1" id="QQ2-59-58"><span +href="mammult_docsu51.html#x60-590002.3.1" id="QQ2-60-59"><span class="cmtt-10x-x-109">tune</span><span class="cmtt-10x-x-109">_rho</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu52.html#x60-590002.3.1" id="QQ2-60-59"><span +href="mammult_docsu52.html#x61-600002.3.1" id="QQ2-61-60"><span class="cmtt-10x-x-109">tune</span><span class="cmtt-10x-x-109">_qnn</span><span class="cmtt-10x-x-109">_adaptive</span></a></span> <br /> <span class="chapterToc" >3 <a -href="mammult_docch3.html#x61-600003" id="QQ2-61-60">Dynamics on multi-layer networks</a></span> +href="mammult_docch3.html#x62-610003" id="QQ2-62-61">Dynamics on multi-layer networks</a></span> <br />  <span class="sectionToc" >3.1 <a -href="mammult_docse6.html#x62-610003.1" id="QQ2-62-61">Interacting opinions - Multilayer ising model</a></span> +href="mammult_docse6.html#x63-620003.1" id="QQ2-63-62">Interacting opinions - Multilayer ising model</a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu53.html#x63-620003.1" id="QQ2-63-62"><span +href="mammult_docsu53.html#x64-630003.1" id="QQ2-64-63"><span class="cmtt-10x-x-109">multiplex</span><span class="cmtt-10x-x-109">_ising</span></a></span> <br />  <span class="sectionToc" >3.2 <a -href="mammult_docse7.html#x64-630003.2" id="QQ2-64-63">Biased random walks</a></span> +href="mammult_docse7.html#x65-640003.2" id="QQ2-65-64">Biased random walks</a></span> <br />   <span class="subsectionToc" >3.2.1 <a -href="mammult_docsu54.html#x65-640003.2.1" id="QQ2-65-64">Stationary distribution</a></span> +href="mammult_docsu54.html#x66-650003.2.1" id="QQ2-66-65">Stationary distribution</a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu55.html#x66-650003.2.1" id="QQ2-66-65"><span +href="mammult_docsu55.html#x67-660003.2.1" id="QQ2-67-66"><span class="cmtt-10x-x-109">statdistr2</span></a></span> <br />   <span class="subsectionToc" >3.2.2 <a -href="mammult_docsu56.html#x67-660003.2.2" id="QQ2-67-66">Entropy rate</a></span> +href="mammult_docsu56.html#x68-670003.2.2" id="QQ2-68-67">Entropy rate</a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu57.html#x68-670003.2.2" id="QQ2-68-67"><span +href="mammult_docsu57.html#x69-680003.2.2" id="QQ2-69-68"><span class="cmtt-10x-x-109">entropyrate2add</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu58.html#x69-680003.2.2" id="QQ2-69-68"><span +href="mammult_docsu58.html#x70-690003.2.2" id="QQ2-70-69"><span class="cmtt-10x-x-109">entropyrate2mult</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu59.html#x70-690003.2.2" id="QQ2-70-69"><span +href="mammult_docsu59.html#x71-700003.2.2" id="QQ2-71-70"><span class="cmtt-10x-x-109">entropyrate2int</span></a></span> </div> @@ -298,8 +300,15 @@ class="cmtt-10x-x-109">entropyrate2int</span></a></span> -<!--l. 265--><p class="noindent" ><span class="next">[<a -href="mammult_docch1.html" id="tailmammult_doc" >next</a>]</span> + + + + + + + +<!--l. 282--><p class="noindent" ><span class="next">[<a +href="mammult_docli1.html" id="tailmammult_doc" >next</a>]</span> </body></html> diff --git a/doc/html/mammult_docch1.html b/doc/html/mammult_docch1.html index c7ba303..c3bd305 100644 --- a/doc/html/mammult_docch1.html +++ b/doc/html/mammult_docch1.html @@ -7,51 +7,48 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > - <!--l. 125--><div class="crosslinks"><p class="noindent">[<a + <!--l. 126--><div class="crosslinks"><p class="noindent">[<a href="mammult_docse1.html" >next</a>] [<a -href="mammult_doc.html" >prev</a>] [<a -href="mammult_doc.html#tailmammult_doc" >prev-tail</a>] [<a +href="mammult_docli1.html" >prev</a>] [<a +href="mammult_docli1.html#tailmammult_docli1.html" >prev-tail</a>] [<a href="#tailmammult_docch1.html">tail</a>] [<a href="mammult_doc.html#mammult_docch1.html" >up</a>] </p></div> <h2 class="chapterHead"><span class="titlemark">Chapter 1</span><br /><a - id="x2-10001"></a>Structural descriptors</h2> + id="x3-20001"></a>Structural descriptors</h2> <div class="sectionTOCS">  <span class="sectionToc" >1.1 <a -href="mammult_docse1.html#x3-20001.1">Basic node, edge, and layer properties</a></span> +href="mammult_docse1.html#x4-30001.1">Basic node, edge, and layer properties</a></span> <br />   <span class="subsectionToc" >1.1.1 <a -href="mammult_docsu1.html#x4-30001.1.1">Node and layer activity</a></span> +href="mammult_docsu1.html#x5-40001.1.1">Node and layer activity</a></span> <br />   <span class="subsectionToc" >1.1.2 <a -href="mammult_docsu11.html#x14-130001.1.2">Layer aggregation</a></span> +href="mammult_docsu11.html#x15-140001.1.2">Layer aggregation</a></span> <br />   <span class="subsectionToc" >1.1.3 <a -href="mammult_docsu14.html#x17-160001.1.3">Node degree, participation coefficient, cartography</a></span> +href="mammult_docsu14.html#x18-170001.1.3">Node degree, participation coefficient, cartography</a></span> <br />   <span class="subsectionToc" >1.1.4 <a -href="mammult_docsu19.html#x22-210001.1.4">Edge overlap, reinforcement</a></span> +href="mammult_docsu19.html#x23-220001.1.4">Edge overlap, reinforcement</a></span> <br />  <span class="sectionToc" >1.2 <a -href="mammult_docse2.html#x26-250001.2">Inter-layer degree correlations</a></span> +href="mammult_docse2.html#x27-260001.2">Inter-layer degree correlations</a></span> <br />   <span class="subsectionToc" >1.2.1 <a -href="mammult_docsu23.html#x27-260001.2.1">Node ranking</a></span> +href="mammult_docsu23.html#x28-270001.2.1">Node ranking</a></span> <br />   <span class="subsectionToc" >1.2.2 <a -href="mammult_docsu27.html#x31-300001.2.2">Interlayer degree correlation coefficients</a></span> +href="mammult_docsu27.html#x32-310001.2.2">Interlayer degree correlation coefficients</a></span> <br />   <span class="subsectionToc" >1.2.3 <a -href="mammult_docsu31.html#x35-340001.2.3">Interlayer degree correlation functions</a></span> - - - +href="mammult_docsu31.html#x36-350001.2.3">Interlayer degree correlation functions</a></span> </div> - <!--l. 208--><div class="crosslinks"><p class="noindent">[<a + <!--l. 217--><div class="crosslinks"><p class="noindent">[<a href="mammult_docse1.html" >next</a>] [<a -href="mammult_doc.html" >prev</a>] [<a -href="mammult_doc.html#tailmammult_doc" >prev-tail</a>] [<a +href="mammult_docli1.html" >prev</a>] [<a +href="mammult_docli1.html#tailmammult_docli1.html" >prev-tail</a>] [<a href="mammult_docch1.html" >front</a>] [<a href="mammult_doc.html#mammult_docch1.html" >up</a>] </p></div> -<!--l. 208--><p class="indent" > <a +<!--l. 217--><p class="indent" > <a id="tailmammult_docch1.html"></a> </body></html> diff --git a/doc/html/mammult_docch2.html b/doc/html/mammult_docch2.html index 3981763..1f2f5e5 100644 --- a/doc/html/mammult_docch2.html +++ b/doc/html/mammult_docch2.html @@ -7,47 +7,47 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > - <!--l. 208--><div class="crosslinks"><p class="noindent">[<a + <!--l. 217--><div class="crosslinks"><p class="noindent">[<a href="mammult_docse3.html" >next</a>] [<a href="mammult_docsu35.html" >prev</a>] [<a href="mammult_docsu35.html#tailmammult_docsu35.html" >prev-tail</a>] [<a href="#tailmammult_docch2.html">tail</a>] [<a href="mammult_doc.html#mammult_docch2.html" >up</a>] </p></div> <h2 class="chapterHead"><span class="titlemark">Chapter 2</span><br /><a - id="x40-390002"></a>Models of multi-layer networks</h2> + id="x41-400002"></a>Models of multi-layer networks</h2> <div class="sectionTOCS">  <span class="sectionToc" >2.1 <a -href="mammult_docse3.html#x41-400002.1">Null models</a></span> +href="mammult_docse3.html#x42-410002.1">Null models</a></span> <br />   <span class="subsectionToc" >2.1.1 <a -href="mammult_docsu36.html#x42-410002.1.1">Null-models of node and layer activity</a></span> +href="mammult_docsu36.html#x43-420002.1.1">Null-models of node and layer activity</a></span> <br />  <span class="sectionToc" >2.2 <a -href="mammult_docse4.html#x47-460002.2">Growing multiplex networks</a></span> +href="mammult_docse4.html#x48-470002.2">Growing multiplex networks</a></span> <br />   <span class="subsectionToc" >2.2.1 <a -href="mammult_docsu41.html#x48-470002.2.1">Linear preferential attachment</a></span> +href="mammult_docsu41.html#x49-480002.2.1">Linear preferential attachment</a></span> <br />   <span class="subsectionToc" >2.2.2 <a -href="mammult_docsu46.html#x53-520002.2.2">Non-linear preferential attachment</a></span> +href="mammult_docsu46.html#x54-530002.2.2">Non-linear preferential attachment</a></span> <br />   <span class="subsectionToc" >2.2.3 <a -href="mammult_docsu48.html#x55-540002.2.3">Utilities</a></span> +href="mammult_docsu48.html#x56-550002.2.3">Utilities</a></span> <br />  <span class="sectionToc" >2.3 <a -href="mammult_docse5.html#x57-560002.3">Multiplex networks with inter-layer degree correlations</a></span> +href="mammult_docse5.html#x58-570002.3">Multiplex networks with inter-layer degree correlations</a></span> <br />   <span class="subsectionToc" >2.3.1 <a -href="mammult_docsu50.html#x58-570002.3.1">Models based on simulated annealing</a></span> +href="mammult_docsu50.html#x59-580002.3.1">Models based on simulated annealing</a></span> </div> - <!--l. 247--><div class="crosslinks"><p class="noindent">[<a + <!--l. 261--><div class="crosslinks"><p class="noindent">[<a href="mammult_docse3.html" >next</a>] [<a href="mammult_docsu35.html" >prev</a>] [<a href="mammult_docsu35.html#tailmammult_docsu35.html" >prev-tail</a>] [<a href="mammult_docch2.html" >front</a>] [<a href="mammult_doc.html#mammult_docch2.html" >up</a>] </p></div> -<!--l. 247--><p class="indent" > <a +<!--l. 261--><p class="indent" > <a id="tailmammult_docch2.html"></a> </body></html> diff --git a/doc/html/mammult_docch3.html b/doc/html/mammult_docch3.html index 64e26b3..9f1bb31 100644 --- a/doc/html/mammult_docch3.html +++ b/doc/html/mammult_docch3.html @@ -7,38 +7,38 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > - <!--l. 247--><div class="crosslinks"><p class="noindent">[<a + <!--l. 261--><div class="crosslinks"><p class="noindent">[<a href="mammult_docse6.html" >next</a>] [<a href="mammult_docsu52.html" >prev</a>] [<a href="mammult_docsu52.html#tailmammult_docsu52.html" >prev-tail</a>] [<a href="#tailmammult_docch3.html">tail</a>] [<a href="mammult_doc.html#mammult_docch3.html" >up</a>] </p></div> <h2 class="chapterHead"><span class="titlemark">Chapter 3</span><br /><a - id="x61-600003"></a>Dynamics on multi-layer networks</h2> + id="x62-610003"></a>Dynamics on multi-layer networks</h2> <div class="sectionTOCS">  <span class="sectionToc" >3.1 <a -href="mammult_docse6.html#x62-610003.1">Interacting opinions - Multilayer ising model</a></span> +href="mammult_docse6.html#x63-620003.1">Interacting opinions - Multilayer ising model</a></span> <br />  <span class="sectionToc" >3.2 <a -href="mammult_docse7.html#x64-630003.2">Biased random walks</a></span> +href="mammult_docse7.html#x65-640003.2">Biased random walks</a></span> <br />   <span class="subsectionToc" >3.2.1 <a -href="mammult_docsu54.html#x65-640003.2.1">Stationary distribution</a></span> +href="mammult_docsu54.html#x66-650003.2.1">Stationary distribution</a></span> <br />   <span class="subsectionToc" >3.2.2 <a -href="mammult_docsu56.html#x67-660003.2.2">Entropy rate</a></span> +href="mammult_docsu56.html#x68-670003.2.2">Entropy rate</a></span> </div> - <!--l. 265--><div class="crosslinks"><p class="noindent">[<a + <!--l. 282--><div class="crosslinks"><p class="noindent">[<a href="mammult_docse6.html" >next</a>] [<a href="mammult_docsu52.html" >prev</a>] [<a href="mammult_docsu52.html#tailmammult_docsu52.html" >prev-tail</a>] [<a href="mammult_docch3.html" >front</a>] [<a href="mammult_doc.html#mammult_docch3.html" >up</a>] </p></div> -<!--l. 265--><p class="indent" > <a +<!--l. 282--><p class="indent" > <a id="tailmammult_docch3.html"></a> </body></html> diff --git a/doc/html/mammult_docli1.html b/doc/html/mammult_docli1.html new file mode 100644 index 0000000..1bcc41e --- /dev/null +++ b/doc/html/mammult_docli1.html @@ -0,0 +1,86 @@ +<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN" + "http://www.w3.org/TR/html4/loose.dtd"> +<html > +<head><title>Contents</title> +<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1"> +<meta name="generator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> +<meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> +<!-- html,index=2,3,4,5,next --> +<meta name="src" content="mammult_doc.tex"> +<meta name="date" content="2015-10-19 17:14:00"> +<link rel="stylesheet" type="text/css" href="mammult_doc.css"> +</head><body +> + <!--l. 124--><div class="crosslinks"><p class="noindent">[<a +href="mammult_docch1.html" >next</a>] [<a +href="mammult_doc.html" >prev</a>] [<a +href="mammult_doc.html#tailmammult_doc" >prev-tail</a>] [<a +href="#tailmammult_docli1.html">tail</a>] [<a +href="mammult_doc.html#mammult_docli1.html" >up</a>] </p></div> + <h2 class="likechapterHead"><a + id="x2-1000"></a>Contents</h2> + <div class="tableofcontents"> + <span class="chapterToc" >1 <a +href="mammult_docch1.html#x3-20001">Structural descriptors</a></span> +<br />  <span class="sectionToc" >1.1 <a +href="mammult_docse1.html#x4-30001.1">Basic node, edge, and layer properties</a></span> +<br />   <span class="subsectionToc" >1.1.1 <a +href="mammult_docsu1.html#x5-40001.1.1">Node and layer activity</a></span> + + + +<br />   <span class="subsectionToc" >1.1.2 <a +href="mammult_docsu11.html#x15-140001.1.2">Layer aggregation</a></span> +<br />   <span class="subsectionToc" >1.1.3 <a +href="mammult_docsu14.html#x18-170001.1.3">Node degree, participation coefficient, cartography</a></span> +<br />   <span class="subsectionToc" >1.1.4 <a +href="mammult_docsu19.html#x23-220001.1.4">Edge overlap, reinforcement</a></span> +<br />  <span class="sectionToc" >1.2 <a +href="mammult_docse2.html#x27-260001.2">Inter-layer degree correlations</a></span> +<br />   <span class="subsectionToc" >1.2.1 <a +href="mammult_docsu23.html#x28-270001.2.1">Node ranking</a></span> +<br />   <span class="subsectionToc" >1.2.2 <a +href="mammult_docsu27.html#x32-310001.2.2">Interlayer degree correlation coefficients</a></span> +<br />   <span class="subsectionToc" >1.2.3 <a +href="mammult_docsu31.html#x36-350001.2.3">Interlayer degree correlation functions</a></span> +<br /> <span class="chapterToc" >2 <a +href="mammult_docch2.html#x41-400002">Models of multi-layer networks</a></span> +<br />  <span class="sectionToc" >2.1 <a +href="mammult_docse3.html#x42-410002.1">Null models</a></span> +<br />   <span class="subsectionToc" >2.1.1 <a +href="mammult_docsu36.html#x43-420002.1.1">Null-models of node and layer activity</a></span> +<br />  <span class="sectionToc" >2.2 <a +href="mammult_docse4.html#x48-470002.2">Growing multiplex networks</a></span> +<br />   <span class="subsectionToc" >2.2.1 <a +href="mammult_docsu41.html#x49-480002.2.1">Linear preferential attachment</a></span> +<br />   <span class="subsectionToc" >2.2.2 <a +href="mammult_docsu46.html#x54-530002.2.2">Non-linear preferential attachment</a></span> +<br />   <span class="subsectionToc" >2.2.3 <a +href="mammult_docsu48.html#x56-550002.2.3">Utilities</a></span> +<br />  <span class="sectionToc" >2.3 <a +href="mammult_docse5.html#x58-570002.3">Multiplex networks with inter-layer degree correlations</a></span> +<br />   <span class="subsectionToc" >2.3.1 <a +href="mammult_docsu50.html#x59-580002.3.1">Models based on simulated annealing</a></span> +<br /> <span class="chapterToc" >3 <a +href="mammult_docch3.html#x62-610003">Dynamics on multi-layer networks</a></span> +<br />  <span class="sectionToc" >3.1 <a +href="mammult_docse6.html#x63-620003.1">Interacting opinions - Multilayer ising model</a></span> +<br />  <span class="sectionToc" >3.2 <a +href="mammult_docse7.html#x65-640003.2">Biased random walks</a></span> +<br />   <span class="subsectionToc" >3.2.1 <a +href="mammult_docsu54.html#x66-650003.2.1">Stationary distribution</a></span> +<br />   <span class="subsectionToc" >3.2.2 <a +href="mammult_docsu56.html#x68-670003.2.2">Entropy rate</a></span> + </div> + + + + <!--l. 126--><div class="crosslinks"><p class="noindent">[<a +href="mammult_docch1.html" >next</a>] [<a +href="mammult_doc.html" >prev</a>] [<a +href="mammult_doc.html#tailmammult_doc" >prev-tail</a>] [<a +href="mammult_docli1.html" >front</a>] [<a +href="mammult_doc.html#mammult_docli1.html" >up</a>] </p></div> +<!--l. 126--><p class="indent" > <a + id="tailmammult_docli1.html"></a> +</body></html> diff --git a/doc/html/mammult_docse1.html b/doc/html/mammult_docse1.html index 6b2da86..8b1be3b 100644 --- a/doc/html/mammult_docse1.html +++ b/doc/html/mammult_docse1.html @@ -7,109 +7,112 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > - <!--l. 127--><div class="crosslinks"><p class="noindent">[<a + <!--l. 128--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu1.html" >next</a>] [<a href="mammult_docch1.html" >prev</a>] [<a href="mammult_docch1.html#tailmammult_docch1.html" >prev-tail</a>] [<a href="#tailmammult_docse1.html">tail</a>] [<a href="mammult_docch1.html#mammult_docse1.html" >up</a>] </p></div> <h3 class="sectionHead"><span class="titlemark">1.1 </span> <a - id="x3-20001.1"></a>Basic node, edge, and layer properties</h3> -<!--l. 129--><p class="noindent" > + id="x4-30001.1"></a>Basic node, edge, and layer properties</h3> +<!--l. 130--><p class="noindent" > <div class="subsectionTOCS">   <span class="subsectionToc" >1.1.1 <a -href="mammult_docsu1.html#x4-30001.1.1">Node and layer activity</a></span> +href="mammult_docsu1.html#x5-40001.1.1">Node and layer activity</a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu2.html#x5-40001.1.1"><span +href="mammult_docsu2.html#x6-50001.1.1"><span class="cmtt-10x-x-109">node</span><span class="cmtt-10x-x-109">_activity.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu3.html#x6-50001.1.1"><span +href="mammult_docsu3.html#x7-60001.1.1"><span class="cmtt-10x-x-109">layer</span><span class="cmtt-10x-x-109">_activity.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu4.html#x7-60001.1.1"><span +href="mammult_docsu4.html#x8-70001.1.1"><span class="cmtt-10x-x-109">node</span><span class="cmtt-10x-x-109">_activity</span><span class="cmtt-10x-x-109">_vectors.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu5.html#x8-70001.1.1"><span +href="mammult_docsu5.html#x9-80001.1.1"><span class="cmtt-10x-x-109">layer</span><span class="cmtt-10x-x-109">_activity</span><span class="cmtt-10x-x-109">_vectors.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu6.html#x9-80001.1.1"><span +href="mammult_docsu6.html#x10-90001.1.1"><span class="cmtt-10x-x-109">multiplexity.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu7.html#x10-90001.1.1"><span +href="mammult_docsu7.html#x11-100001.1.1"><span class="cmtt-10x-x-109">hamming</span><span class="cmtt-10x-x-109">_dist.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu8.html#x11-100001.1.1"><span +href="mammult_docsu8.html#x12-110001.1.1"><span class="cmtt-10x-x-109">node</span><span class="cmtt-10x-x-109">_degree</span><span class="cmtt-10x-x-109">_vectors.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu9.html#x12-110001.1.1"><span +href="mammult_docsu9.html#x13-120001.1.1"><span class="cmtt-10x-x-109">degs</span><span class="cmtt-10x-x-109">_to</span><span class="cmtt-10x-x-109">_binary.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu10.html#x13-120001.1.1"><span +href="mammult_docsu10.html#x14-130001.1.1"><span class="cmtt-10x-x-109">degs</span><span class="cmtt-10x-x-109">_to</span><span class="cmtt-10x-x-109">_activity</span><span class="cmtt-10x-x-109">_overlap.py</span></a></span> <br />   <span class="subsectionToc" >1.1.2 <a -href="mammult_docsu11.html#x14-130001.1.2">Layer aggregation</a></span> +href="mammult_docsu11.html#x15-140001.1.2">Layer aggregation</a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu12.html#x15-140001.1.2"><span +href="mammult_docsu12.html#x16-150001.1.2"><span class="cmtt-10x-x-109">aggregate</span><span class="cmtt-10x-x-109">_layers</span><span class="cmtt-10x-x-109">_w.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu13.html#x16-150001.1.2"><span +href="mammult_docsu13.html#x17-160001.1.2"><span class="cmtt-10x-x-109">intersect</span><span class="cmtt-10x-x-109">_layers.py</span></a></span> <br />   <span class="subsectionToc" >1.1.3 <a -href="mammult_docsu14.html#x17-160001.1.3">Node degree, participation coefficient, cartography</a></span> +href="mammult_docsu14.html#x18-170001.1.3">Node degree, participation coefficient, cartography</a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu15.html#x18-170001.1.3"><span +href="mammult_docsu15.html#x19-180001.1.3"><span class="cmtt-10x-x-109">overlap</span><span class="cmtt-10x-x-109">_degree.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu16.html#x19-180001.1.3"><span +href="mammult_docsu16.html#x20-190001.1.3"><span class="cmtt-10x-x-109">cartography</span><span class="cmtt-10x-x-109">_from</span><span class="cmtt-10x-x-109">_layers.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu17.html#x20-190001.1.3"><span +href="mammult_docsu17.html#x21-200001.1.3"><span class="cmtt-10x-x-109">cartography</span><span class="cmtt-10x-x-109">_from</span><span class="cmtt-10x-x-109">_deg</span><span class="cmtt-10x-x-109">_vectors.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu18.html#x21-200001.1.3"><span +href="mammult_docsu18.html#x22-210001.1.3"><span class="cmtt-10x-x-109">cartography</span><span class="cmtt-10x-x-109">_from</span><span class="cmtt-10x-x-109">_columns.py</span></a></span> <br />   <span class="subsectionToc" >1.1.4 <a -href="mammult_docsu19.html#x22-210001.1.4">Edge overlap, reinforcement</a></span> +href="mammult_docsu19.html#x23-220001.1.4">Edge overlap, reinforcement</a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu20.html#x23-220001.1.4"><span +href="mammult_docsu20.html#x24-230001.1.4"><span class="cmtt-10x-x-109">edge</span><span class="cmtt-10x-x-109">_overlap.py</span></a></span> + + + <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu21.html#x24-230001.1.4"><span +href="mammult_docsu21.html#x25-240001.1.4"><span class="cmtt-10x-x-109">avg</span><span class="cmtt-10x-x-109">_edge</span><span class="cmtt-10x-x-109">_overlap.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu22.html#x25-240001.1.4"><span +href="mammult_docsu22.html#x26-250001.1.4"><span class="cmtt-10x-x-109">reinforcement.py</span></a></span> </div> @@ -118,12 +121,12 @@ class="cmtt-10x-x-109">reinforcement.py</span></a></span> - <!--l. 172--><div class="crosslinks"><p class="noindent">[<a + <!--l. 178--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu1.html" >next</a>] [<a href="mammult_docch1.html" >prev</a>] [<a href="mammult_docch1.html#tailmammult_docch1.html" >prev-tail</a>] [<a href="mammult_docse1.html" >front</a>] [<a href="mammult_docch1.html#mammult_docse1.html" >up</a>] </p></div> -<!--l. 172--><p class="indent" > <a +<!--l. 178--><p class="indent" > <a id="tailmammult_docse1.html"></a> </body></html> diff --git a/doc/html/mammult_docse2.html b/doc/html/mammult_docse2.html index 3f56105..4def360 100644 --- a/doc/html/mammult_docse2.html +++ b/doc/html/mammult_docse2.html @@ -7,70 +7,70 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > - <!--l. 172--><div class="crosslinks"><p class="noindent">[<a + <!--l. 178--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu23.html" >next</a>] [<a href="mammult_docsu22.html" >prev</a>] [<a href="mammult_docsu22.html#tailmammult_docsu22.html" >prev-tail</a>] [<a href="#tailmammult_docse2.html">tail</a>] [<a href="mammult_docch1.html#mammult_docse2.html" >up</a>] </p></div> <h3 class="sectionHead"><span class="titlemark">1.2 </span> <a - id="x26-250001.2"></a>Inter-layer degree correlations</h3> -<!--l. 174--><p class="noindent" > + id="x27-260001.2"></a>Inter-layer degree correlations</h3> +<!--l. 180--><p class="noindent" > <div class="subsectionTOCS">   <span class="subsectionToc" >1.2.1 <a -href="mammult_docsu23.html#x27-260001.2.1">Node ranking</a></span> +href="mammult_docsu23.html#x28-270001.2.1">Node ranking</a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu24.html#x28-270001.2.1"><span +href="mammult_docsu24.html#x29-280001.2.1"><span class="cmtt-10x-x-109">rank</span><span class="cmtt-10x-x-109">_nodes.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu25.html#x29-280001.2.1"><span +href="mammult_docsu25.html#x30-290001.2.1"><span class="cmtt-10x-x-109">rank</span><span class="cmtt-10x-x-109">_nodes</span><span class="cmtt-10x-x-109">_thresh.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu26.html#x30-290001.2.1"><span +href="mammult_docsu26.html#x31-300001.2.1"><span class="cmtt-10x-x-109">rank</span><span class="cmtt-10x-x-109">_occurrence.py</span></a></span> <br />   <span class="subsectionToc" >1.2.2 <a -href="mammult_docsu27.html#x31-300001.2.2">Interlayer degree correlation coefficients</a></span> +href="mammult_docsu27.html#x32-310001.2.2">Interlayer degree correlation coefficients</a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu28.html#x32-310001.2.2"><span +href="mammult_docsu28.html#x33-320001.2.2"><span class="cmtt-10x-x-109">compute</span><span class="cmtt-10x-x-109">_pearson.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu29.html#x33-320001.2.2"><span +href="mammult_docsu29.html#x34-330001.2.2"><span class="cmtt-10x-x-109">compute</span><span class="cmtt-10x-x-109">_rho.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu30.html#x34-330001.2.2"><span +href="mammult_docsu30.html#x35-340001.2.2"><span class="cmtt-10x-x-109">compute</span><span class="cmtt-10x-x-109">_tau.py</span></a></span> <br />   <span class="subsectionToc" >1.2.3 <a -href="mammult_docsu31.html#x35-340001.2.3">Interlayer degree correlation functions</a></span> +href="mammult_docsu31.html#x36-350001.2.3">Interlayer degree correlation functions</a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu32.html#x36-350001.2.3"><span +href="mammult_docsu32.html#x37-360001.2.3"><span class="cmtt-10x-x-109">dump</span><span class="cmtt-10x-x-109">_k</span><span class="cmtt-10x-x-109">_q</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu33.html#x37-360001.2.3"><span +href="mammult_docsu33.html#x38-370001.2.3"><span class="cmtt-10x-x-109">knn</span><span class="cmtt-10x-x-109">_q</span><span class="cmtt-10x-x-109">_from</span><span class="cmtt-10x-x-109">_layers.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu34.html#x38-370001.2.3"><span +href="mammult_docsu34.html#x39-380001.2.3"><span class="cmtt-10x-x-109">knn</span><span class="cmtt-10x-x-109">_q</span><span class="cmtt-10x-x-109">_from</span><span class="cmtt-10x-x-109">_degrees.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu35.html#x39-380001.2.3"><span +href="mammult_docsu35.html#x40-390001.2.3"><span class="cmtt-10x-x-109">fit</span><span class="cmtt-10x-x-109">_knn</span></a></span> </div> @@ -79,12 +79,12 @@ class="cmtt-10x-x-109">_knn</span></a></span> - <!--l. 208--><div class="crosslinks"><p class="noindent">[<a + <!--l. 217--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu23.html" >next</a>] [<a href="mammult_docsu22.html" >prev</a>] [<a href="mammult_docsu22.html#tailmammult_docsu22.html" >prev-tail</a>] [<a href="mammult_docse2.html" >front</a>] [<a href="mammult_docch1.html#mammult_docse2.html" >up</a>] </p></div> -<!--l. 208--><p class="indent" > <a +<!--l. 217--><p class="indent" > <a id="tailmammult_docse2.html"></a> </body></html> diff --git a/doc/html/mammult_docse3.html b/doc/html/mammult_docse3.html index 3c7a57d..51390cf 100644 --- a/doc/html/mammult_docse3.html +++ b/doc/html/mammult_docse3.html @@ -7,36 +7,36 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > - <!--l. 210--><div class="crosslinks"><p class="noindent">[<a + <!--l. 219--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu36.html" >next</a>] [<a href="mammult_docch2.html" >prev</a>] [<a href="mammult_docch2.html#tailmammult_docch2.html" >prev-tail</a>] [<a href="#tailmammult_docse3.html">tail</a>] [<a href="mammult_docch2.html#mammult_docse3.html" >up</a>] </p></div> <h3 class="sectionHead"><span class="titlemark">2.1 </span> <a - id="x41-400002.1"></a>Null models</h3> -<!--l. 212--><p class="noindent" > + id="x42-410002.1"></a>Null models</h3> +<!--l. 221--><p class="noindent" > <div class="subsectionTOCS">   <span class="subsectionToc" >2.1.1 <a -href="mammult_docsu36.html#x42-410002.1.1">Null-models of node and layer activity</a></span> +href="mammult_docsu36.html#x43-420002.1.1">Null-models of node and layer activity</a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu37.html#x43-420002.1.1"><span +href="mammult_docsu37.html#x44-430002.1.1"><span class="cmtt-10x-x-109">model</span><span class="cmtt-10x-x-109">_hypergeometric.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu38.html#x44-430002.1.1"><span +href="mammult_docsu38.html#x45-440002.1.1"><span class="cmtt-10x-x-109">model</span><span class="cmtt-10x-x-109">_MDM.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu39.html#x45-440002.1.1"><span +href="mammult_docsu39.html#x46-450002.1.1"><span class="cmtt-10x-x-109">model</span><span class="cmtt-10x-x-109">_MSM.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu40.html#x46-450002.1.1"><span +href="mammult_docsu40.html#x47-460002.1.1"><span class="cmtt-10x-x-109">model</span><span class="cmtt-10x-x-109">_layer</span><span class="cmtt-10x-x-109">_growth.py</span></a></span> @@ -44,12 +44,12 @@ class="cmtt-10x-x-109">_growth.py</span></a></span> - <!--l. 220--><div class="crosslinks"><p class="noindent">[<a + <!--l. 230--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu36.html" >next</a>] [<a href="mammult_docch2.html" >prev</a>] [<a href="mammult_docch2.html#tailmammult_docch2.html" >prev-tail</a>] [<a href="mammult_docse3.html" >front</a>] [<a href="mammult_docch2.html#mammult_docse3.html" >up</a>] </p></div> -<!--l. 220--><p class="indent" > <a +<!--l. 230--><p class="indent" > <a id="tailmammult_docse3.html"></a> </body></html> diff --git a/doc/html/mammult_docse4.html b/doc/html/mammult_docse4.html index c7f96fa..b2f804d 100644 --- a/doc/html/mammult_docse4.html +++ b/doc/html/mammult_docse4.html @@ -7,54 +7,54 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > - <!--l. 220--><div class="crosslinks"><p class="noindent">[<a + <!--l. 230--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu41.html" >next</a>] [<a href="mammult_docsu40.html" >prev</a>] [<a href="mammult_docsu40.html#tailmammult_docsu40.html" >prev-tail</a>] [<a href="#tailmammult_docse4.html">tail</a>] [<a href="mammult_docch2.html#mammult_docse4.html" >up</a>] </p></div> <h3 class="sectionHead"><span class="titlemark">2.2 </span> <a - id="x47-460002.2"></a>Growing multiplex networks</h3> -<!--l. 222--><p class="noindent" > + id="x48-470002.2"></a>Growing multiplex networks</h3> +<!--l. 232--><p class="noindent" > <div class="subsectionTOCS">   <span class="subsectionToc" >2.2.1 <a -href="mammult_docsu41.html#x48-470002.2.1">Linear preferential attachment</a></span> +href="mammult_docsu41.html#x49-480002.2.1">Linear preferential attachment</a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu42.html#x49-480002.2.1"><span +href="mammult_docsu42.html#x50-490002.2.1"><span class="cmtt-10x-x-109">nibilab</span><span class="cmtt-10x-x-109">_linear</span><span class="cmtt-10x-x-109">_delta</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu43.html#x50-490002.2.1"><span +href="mammult_docsu43.html#x51-500002.2.1"><span class="cmtt-10x-x-109">nibilab</span><span class="cmtt-10x-x-109">_linear</span><span class="cmtt-10x-x-109">_delay</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu44.html#x51-500002.2.1"><span +href="mammult_docsu44.html#x52-510002.2.1"><span class="cmtt-10x-x-109">nibilab</span><span class="cmtt-10x-x-109">_linear</span><span class="cmtt-10x-x-109">_delay</span><span class="cmtt-10x-x-109">_mix</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu45.html#x52-510002.2.1"><span +href="mammult_docsu45.html#x53-520002.2.1"><span class="cmtt-10x-x-109">nibilab</span><span class="cmtt-10x-x-109">_linear</span><span class="cmtt-10x-x-109">_random</span><span class="cmtt-10x-x-109">_times</span></a></span> <br />   <span class="subsectionToc" >2.2.2 <a -href="mammult_docsu46.html#x53-520002.2.2">Non-linear preferential attachment</a></span> +href="mammult_docsu46.html#x54-530002.2.2">Non-linear preferential attachment</a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu47.html#x54-530002.2.2"><span +href="mammult_docsu47.html#x55-540002.2.2"><span class="cmtt-10x-x-109">nibilab</span><span class="cmtt-10x-x-109">_nonlinear</span></a></span> <br />   <span class="subsectionToc" >2.2.3 <a -href="mammult_docsu48.html#x55-540002.2.3">Utilities</a></span> +href="mammult_docsu48.html#x56-550002.2.3">Utilities</a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu49.html#x56-550002.2.3"><span +href="mammult_docsu49.html#x57-560002.2.3"><span class="cmtt-10x-x-109">node</span><span class="cmtt-10x-x-109">_deg</span><span class="cmtt-10x-x-109">_over</span><span @@ -65,12 +65,12 @@ class="cmtt-10x-x-109">_time.py</span></a></span> - <!--l. 239--><div class="crosslinks"><p class="noindent">[<a + <!--l. 252--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu41.html" >next</a>] [<a href="mammult_docsu40.html" >prev</a>] [<a href="mammult_docsu40.html#tailmammult_docsu40.html" >prev-tail</a>] [<a href="mammult_docse4.html" >front</a>] [<a href="mammult_docch2.html#mammult_docse4.html" >up</a>] </p></div> -<!--l. 239--><p class="indent" > <a +<!--l. 252--><p class="indent" > <a id="tailmammult_docse4.html"></a> </body></html> diff --git a/doc/html/mammult_docse5.html b/doc/html/mammult_docse5.html index 65b7d82..6f61c57 100644 --- a/doc/html/mammult_docse5.html +++ b/doc/html/mammult_docse5.html @@ -7,28 +7,28 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > - <!--l. 239--><div class="crosslinks"><p class="noindent">[<a + <!--l. 252--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu50.html" >next</a>] [<a href="mammult_docsu49.html" >prev</a>] [<a href="mammult_docsu49.html#tailmammult_docsu49.html" >prev-tail</a>] [<a href="#tailmammult_docse5.html">tail</a>] [<a href="mammult_docch2.html#mammult_docse5.html" >up</a>] </p></div> <h3 class="sectionHead"><span class="titlemark">2.3 </span> <a - id="x57-560002.3"></a>Multiplex networks with inter-layer degree correlations</h3> -<!--l. 241--><p class="noindent" > + id="x58-570002.3"></a>Multiplex networks with inter-layer degree correlations</h3> +<!--l. 254--><p class="noindent" > <div class="subsectionTOCS">   <span class="subsectionToc" >2.3.1 <a -href="mammult_docsu50.html#x58-570002.3.1">Models based on simulated annealing</a></span> +href="mammult_docsu50.html#x59-580002.3.1">Models based on simulated annealing</a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu51.html#x59-580002.3.1"><span +href="mammult_docsu51.html#x60-590002.3.1"><span class="cmtt-10x-x-109">tune</span><span class="cmtt-10x-x-109">_rho</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu52.html#x60-590002.3.1"><span +href="mammult_docsu52.html#x61-600002.3.1"><span class="cmtt-10x-x-109">tune</span><span class="cmtt-10x-x-109">_qnn</span><span class="cmtt-10x-x-109">_adaptive</span></a></span> @@ -36,12 +36,12 @@ class="cmtt-10x-x-109">_adaptive</span></a></span> - <!--l. 247--><div class="crosslinks"><p class="noindent">[<a + <!--l. 261--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu50.html" >next</a>] [<a href="mammult_docsu49.html" >prev</a>] [<a href="mammult_docsu49.html#tailmammult_docsu49.html" >prev-tail</a>] [<a href="mammult_docse5.html" >front</a>] [<a href="mammult_docch2.html#mammult_docse5.html" >up</a>] </p></div> -<!--l. 247--><p class="indent" > <a +<!--l. 261--><p class="indent" > <a id="tailmammult_docse5.html"></a> </body></html> diff --git a/doc/html/mammult_docse6.html b/doc/html/mammult_docse6.html index 36d0a33..c0109c6 100644 --- a/doc/html/mammult_docse6.html +++ b/doc/html/mammult_docse6.html @@ -7,34 +7,34 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > - <!--l. 249--><div class="crosslinks"><p class="noindent">[<a + <!--l. 263--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu53.html" >next</a>] [<a href="mammult_docch3.html" >prev</a>] [<a href="mammult_docch3.html#tailmammult_docch3.html" >prev-tail</a>] [<a href="#tailmammult_docse6.html">tail</a>] [<a href="mammult_docch3.html#mammult_docse6.html" >up</a>] </p></div> <h3 class="sectionHead"><span class="titlemark">3.1 </span> <a - id="x62-610003.1"></a>Interacting opinions - Multilayer ising model</h3> + id="x63-620003.1"></a>Interacting opinions - Multilayer ising model</h3> <!--l. 7--><p class="noindent" > <div class="subsubsectionTOCS">    <span class="subsubsectionToc" ><a -href="mammult_docsu53.html#x63-620003.1"><span +href="mammult_docsu53.html#x64-630003.1"><span class="cmtt-10x-x-109">multiplex</span><span class="cmtt-10x-x-109">_ising</span></a></span> </div> - <!--l. 253--><div class="crosslinks"><p class="noindent">[<a + <!--l. 268--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu53.html" >next</a>] [<a href="mammult_docch3.html" >prev</a>] [<a href="mammult_docch3.html#tailmammult_docch3.html" >prev-tail</a>] [<a href="mammult_docse6.html" >front</a>] [<a href="mammult_docch3.html#mammult_docse6.html" >up</a>] </p></div> -<!--l. 253--><p class="indent" > <a +<!--l. 268--><p class="indent" > <a id="tailmammult_docse6.html"></a> </body></html> diff --git a/doc/html/mammult_docse7.html b/doc/html/mammult_docse7.html index 9c46101..05a3257 100644 --- a/doc/html/mammult_docse7.html +++ b/doc/html/mammult_docse7.html @@ -7,43 +7,43 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > - <!--l. 253--><div class="crosslinks"><p class="noindent">[<a + <!--l. 268--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu54.html" >next</a>] [<a href="mammult_docsu53.html" >prev</a>] [<a href="mammult_docsu53.html#tailmammult_docsu53.html" >prev-tail</a>] [<a href="#tailmammult_docse7.html">tail</a>] [<a href="mammult_docch3.html#mammult_docse7.html" >up</a>] </p></div> <h3 class="sectionHead"><span class="titlemark">3.2 </span> <a - id="x64-630003.2"></a>Biased random walks</h3> -<!--l. 255--><p class="noindent" > + id="x65-640003.2"></a>Biased random walks</h3> +<!--l. 270--><p class="noindent" > <div class="subsectionTOCS">   <span class="subsectionToc" >3.2.1 <a -href="mammult_docsu54.html#x65-640003.2.1">Stationary distribution</a></span> +href="mammult_docsu54.html#x66-650003.2.1">Stationary distribution</a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu55.html#x66-650003.2.1"><span +href="mammult_docsu55.html#x67-660003.2.1"><span class="cmtt-10x-x-109">statdistr2</span></a></span> <br />   <span class="subsectionToc" >3.2.2 <a -href="mammult_docsu56.html#x67-660003.2.2">Entropy rate</a></span> +href="mammult_docsu56.html#x68-670003.2.2">Entropy rate</a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu57.html#x68-670003.2.2"><span +href="mammult_docsu57.html#x69-680003.2.2"><span class="cmtt-10x-x-109">entropyrate2add</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu58.html#x69-680003.2.2"><span +href="mammult_docsu58.html#x70-690003.2.2"><span class="cmtt-10x-x-109">entropyrate2mult</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu59.html#x70-690003.2.2"><span +href="mammult_docsu59.html#x71-700003.2.2"><span class="cmtt-10x-x-109">entropyrate2int</span></a></span> </div> -<!--l. 265--><div class="crosslinks"><p class="noindent">[<a +<!--l. 282--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu54.html" >next</a>] [<a href="mammult_docsu53.html" >prev</a>] [<a href="mammult_docsu53.html#tailmammult_docsu53.html" >prev-tail</a>] [<a href="mammult_docse7.html" >front</a>] [<a href="mammult_docch3.html#mammult_docse7.html" >up</a>] </p></div> -<!--l. 265--><p class="indent" > <a +<!--l. 282--><p class="indent" > <a id="tailmammult_docse7.html"></a> </body></html> diff --git a/doc/html/mammult_docsu1.html b/doc/html/mammult_docsu1.html index 47a6c51..2114571 100644 --- a/doc/html/mammult_docsu1.html +++ b/doc/html/mammult_docsu1.html @@ -7,63 +7,60 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > - <!--l. 129--><div class="crosslinks"><p class="noindent">[<a + <!--l. 130--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu2.html" >next</a>] [<a href="mammult_docse1.html" >prev</a>] [<a href="mammult_docse1.html#tailmammult_docse1.html" >prev-tail</a>] [<a href="#tailmammult_docsu1.html">tail</a>] [<a href="mammult_docse1.html#mammult_docsu1.html" >up</a>] </p></div> <h4 class="subsectionHead"><span class="titlemark">1.1.1 </span> <a - id="x4-30001.1.1"></a>Node and layer activity</h4> -<!--l. 131--><p class="noindent" >This section includes programs related to the computation of node and layer + id="x5-40001.1.1"></a>Node and layer activity</h4> +<!--l. 132--><p class="noindent" >This section includes programs related to the computation of node and layer activity, activity vectors, pairwise multiplexity, pairwise normalised Hamming distance, node degree vectors. <!--l. 7--><p class="noindent" > <div class="subsubsectionTOCS">    <span class="subsubsectionToc" ><a -href="mammult_docsu2.html#x5-40001.1.1"><span +href="mammult_docsu2.html#x6-50001.1.1"><span class="cmtt-10x-x-109">node</span><span class="cmtt-10x-x-109">_activity.py</span></a></span> - - - <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu3.html#x6-50001.1.1"><span +href="mammult_docsu3.html#x7-60001.1.1"><span class="cmtt-10x-x-109">layer</span><span class="cmtt-10x-x-109">_activity.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu4.html#x7-60001.1.1"><span +href="mammult_docsu4.html#x8-70001.1.1"><span class="cmtt-10x-x-109">node</span><span class="cmtt-10x-x-109">_activity</span><span class="cmtt-10x-x-109">_vectors.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu5.html#x8-70001.1.1"><span +href="mammult_docsu5.html#x9-80001.1.1"><span class="cmtt-10x-x-109">layer</span><span class="cmtt-10x-x-109">_activity</span><span class="cmtt-10x-x-109">_vectors.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu6.html#x9-80001.1.1"><span +href="mammult_docsu6.html#x10-90001.1.1"><span class="cmtt-10x-x-109">multiplexity.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu7.html#x10-90001.1.1"><span +href="mammult_docsu7.html#x11-100001.1.1"><span class="cmtt-10x-x-109">hamming</span><span class="cmtt-10x-x-109">_dist.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu8.html#x11-100001.1.1"><span +href="mammult_docsu8.html#x12-110001.1.1"><span class="cmtt-10x-x-109">node</span><span class="cmtt-10x-x-109">_degree</span><span class="cmtt-10x-x-109">_vectors.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu9.html#x12-110001.1.1"><span +href="mammult_docsu9.html#x13-120001.1.1"><span class="cmtt-10x-x-109">degs</span><span class="cmtt-10x-x-109">_to</span><span class="cmtt-10x-x-109">_binary.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu10.html#x13-120001.1.1"><span +href="mammult_docsu10.html#x14-130001.1.1"><span class="cmtt-10x-x-109">degs</span><span class="cmtt-10x-x-109">_to</span><span class="cmtt-10x-x-109">_activity</span><span @@ -80,12 +77,12 @@ class="cmtt-10x-x-109">_overlap.py</span></a></span> - <!--l. 145--><div class="crosslinks"><p class="noindent">[<a + <!--l. 148--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu2.html" >next</a>] [<a href="mammult_docse1.html" >prev</a>] [<a href="mammult_docse1.html#tailmammult_docse1.html" >prev-tail</a>] [<a href="mammult_docsu1.html" >front</a>] [<a href="mammult_docse1.html#mammult_docsu1.html" >up</a>] </p></div> -<!--l. 145--><p class="indent" > <a +<!--l. 148--><p class="indent" > <a id="tailmammult_docsu1.html"></a> </body></html> diff --git a/doc/html/mammult_docsu10.html b/doc/html/mammult_docsu10.html index deea403..fc37d72 100644 --- a/doc/html/mammult_docsu10.html +++ b/doc/html/mammult_docsu10.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -18,7 +18,7 @@ href="mammult_docsu9.html#tailmammult_docsu9.html" >prev-tail</a>] [<a href="#tailmammult_docsu10.html">tail</a>] [<a href="mammult_docsu1.html#mammult_docsu10.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x13-120001.1.1"></a><span + id="x14-130001.1.1"></a><span class="cmtt-10x-x-109">degs</span><span class="cmtt-10x-x-109">_to</span><span class="cmtt-10x-x-109">_activity</span><span @@ -86,12 +86,15 @@ class="cmtt-10x-x-109">http://journals.aps.org/pre/abstract/10.1103/PhysRevE.92. - <!--l. 145--><div class="crosslinks"><p class="noindent">[<a + + + + <!--l. 148--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu11.html" >next</a>] [<a href="mammult_docsu9.html" >prev</a>] [<a href="mammult_docsu9.html#tailmammult_docsu9.html" >prev-tail</a>] [<a href="mammult_docsu10.html" >front</a>] [<a href="mammult_docsu1.html#mammult_docsu10.html" >up</a>] </p></div> -<!--l. 145--><p class="indent" > <a +<!--l. 148--><p class="indent" > <a id="tailmammult_docsu10.html"></a> </body></html> diff --git a/doc/html/mammult_docsu11.html b/doc/html/mammult_docsu11.html index b504286..75e7e47 100644 --- a/doc/html/mammult_docsu11.html +++ b/doc/html/mammult_docsu11.html @@ -7,29 +7,29 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > - <!--l. 145--><div class="crosslinks"><p class="noindent">[<a + <!--l. 148--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu12.html" >next</a>] [<a href="mammult_docsu10.html" >prev</a>] [<a href="mammult_docsu10.html#tailmammult_docsu10.html" >prev-tail</a>] [<a href="#tailmammult_docsu11.html">tail</a>] [<a href="mammult_docse1.html#mammult_docsu11.html" >up</a>] </p></div> <h4 class="subsectionHead"><span class="titlemark">1.1.2 </span> <a - id="x14-130001.1.2"></a>Layer aggregation</h4> -<!--l. 147--><p class="noindent" >This section includes programs to obtain various single-layer aggregated graphs + id="x15-140001.1.2"></a>Layer aggregation</h4> +<!--l. 150--><p class="noindent" >This section includes programs to obtain various single-layer aggregated graphs associated to a multiplex network. <!--l. 3--><p class="noindent" > <div class="subsubsectionTOCS">    <span class="subsubsectionToc" ><a -href="mammult_docsu12.html#x15-140001.1.2"><span +href="mammult_docsu12.html#x16-150001.1.2"><span class="cmtt-10x-x-109">aggregate</span><span class="cmtt-10x-x-109">_layers</span><span class="cmtt-10x-x-109">_w.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu13.html#x16-150001.1.2"><span +href="mammult_docsu13.html#x17-160001.1.2"><span class="cmtt-10x-x-109">intersect</span><span class="cmtt-10x-x-109">_layers.py</span></a></span> </div> @@ -37,12 +37,12 @@ class="cmtt-10x-x-109">_layers.py</span></a></span> - <!--l. 153--><div class="crosslinks"><p class="noindent">[<a + <!--l. 157--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu12.html" >next</a>] [<a href="mammult_docsu10.html" >prev</a>] [<a href="mammult_docsu10.html#tailmammult_docsu10.html" >prev-tail</a>] [<a href="mammult_docsu11.html" >front</a>] [<a href="mammult_docse1.html#mammult_docsu11.html" >up</a>] </p></div> -<!--l. 153--><p class="indent" > <a +<!--l. 157--><p class="indent" > <a id="tailmammult_docsu11.html"></a> </body></html> diff --git a/doc/html/mammult_docsu12.html b/doc/html/mammult_docsu12.html index 24166d2..ee927e2 100644 --- a/doc/html/mammult_docsu12.html +++ b/doc/html/mammult_docsu12.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -18,7 +18,7 @@ href="mammult_docsu11.html#tailmammult_docsu11.html" >prev-tail</a>] [<a href="#tailmammult_docsu12.html">tail</a>] [<a href="mammult_docsu11.html#mammult_docsu12.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x15-140001.1.2"></a><span + id="x16-150001.1.2"></a><span class="cmtt-10x-x-109">aggregate</span><span class="cmtt-10x-x-109">_layers</span><span class="cmtt-10x-x-109">_w.py</span></h5> diff --git a/doc/html/mammult_docsu13.html b/doc/html/mammult_docsu13.html index aa6075c..036a144 100644 --- a/doc/html/mammult_docsu13.html +++ b/doc/html/mammult_docsu13.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -18,7 +18,7 @@ href="mammult_docsu12.html#tailmammult_docsu12.html" >prev-tail</a>] [<a href="#tailmammult_docsu13.html">tail</a>] [<a href="mammult_docsu11.html#mammult_docsu13.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x16-150001.1.2"></a><span + id="x17-160001.1.2"></a><span class="cmtt-10x-x-109">intersect</span><span class="cmtt-10x-x-109">_layers.py</span></h5> <!--l. 3--><p class="noindent" ><span @@ -83,12 +83,15 @@ class="cmtt-10x-x-109">http://journals.aps.org/pre/abstract/10.1103/PhysRevE.92. - <!--l. 153--><div class="crosslinks"><p class="noindent">[<a + + + + <!--l. 157--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu14.html" >next</a>] [<a href="mammult_docsu12.html" >prev</a>] [<a href="mammult_docsu12.html#tailmammult_docsu12.html" >prev-tail</a>] [<a href="mammult_docsu13.html" >front</a>] [<a href="mammult_docsu11.html#mammult_docsu13.html" >up</a>] </p></div> -<!--l. 153--><p class="indent" > <a +<!--l. 157--><p class="indent" > <a id="tailmammult_docsu13.html"></a> </body></html> diff --git a/doc/html/mammult_docsu14.html b/doc/html/mammult_docsu14.html index 59bb308..198035c 100644 --- a/doc/html/mammult_docsu14.html +++ b/doc/html/mammult_docsu14.html @@ -7,39 +7,39 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > - <!--l. 153--><div class="crosslinks"><p class="noindent">[<a + <!--l. 157--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu15.html" >next</a>] [<a href="mammult_docsu13.html" >prev</a>] [<a href="mammult_docsu13.html#tailmammult_docsu13.html" >prev-tail</a>] [<a href="#tailmammult_docsu14.html">tail</a>] [<a href="mammult_docse1.html#mammult_docsu14.html" >up</a>] </p></div> <h4 class="subsectionHead"><span class="titlemark">1.1.3 </span> <a - id="x17-160001.1.3"></a>Node degree, participation coefficient, cartography</h4> -<!--l. 155--><p class="noindent" >This section includes programs to compute the total degree and participation + id="x18-170001.1.3"></a>Node degree, participation coefficient, cartography</h4> +<!--l. 159--><p class="noindent" >This section includes programs to compute the total degree and participation coefficient of each node, and to draw the cartography diagram of a multiplex. <!--l. 3--><p class="noindent" > <div class="subsubsectionTOCS">    <span class="subsubsectionToc" ><a -href="mammult_docsu15.html#x18-170001.1.3"><span +href="mammult_docsu15.html#x19-180001.1.3"><span class="cmtt-10x-x-109">overlap</span><span class="cmtt-10x-x-109">_degree.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu16.html#x19-180001.1.3"><span +href="mammult_docsu16.html#x20-190001.1.3"><span class="cmtt-10x-x-109">cartography</span><span class="cmtt-10x-x-109">_from</span><span class="cmtt-10x-x-109">_layers.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu17.html#x20-190001.1.3"><span +href="mammult_docsu17.html#x21-200001.1.3"><span class="cmtt-10x-x-109">cartography</span><span class="cmtt-10x-x-109">_from</span><span class="cmtt-10x-x-109">_deg</span><span class="cmtt-10x-x-109">_vectors.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu18.html#x21-200001.1.3"><span +href="mammult_docsu18.html#x22-210001.1.3"><span class="cmtt-10x-x-109">cartography</span><span class="cmtt-10x-x-109">_from</span><span class="cmtt-10x-x-109">_columns.py</span></a></span> @@ -50,12 +50,12 @@ class="cmtt-10x-x-109">_columns.py</span></a></span> - <!--l. 164--><div class="crosslinks"><p class="noindent">[<a + <!--l. 169--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu15.html" >next</a>] [<a href="mammult_docsu13.html" >prev</a>] [<a href="mammult_docsu13.html#tailmammult_docsu13.html" >prev-tail</a>] [<a href="mammult_docsu14.html" >front</a>] [<a href="mammult_docse1.html#mammult_docsu14.html" >up</a>] </p></div> -<!--l. 164--><p class="indent" > <a +<!--l. 169--><p class="indent" > <a id="tailmammult_docsu14.html"></a> </body></html> diff --git a/doc/html/mammult_docsu15.html b/doc/html/mammult_docsu15.html index 217dbc3..3d11f56 100644 --- a/doc/html/mammult_docsu15.html +++ b/doc/html/mammult_docsu15.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -18,7 +18,7 @@ href="mammult_docsu14.html#tailmammult_docsu14.html" >prev-tail</a>] [<a href="#tailmammult_docsu15.html">tail</a>] [<a href="mammult_docsu14.html#mammult_docsu15.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x18-170001.1.3"></a><span + id="x19-180001.1.3"></a><span class="cmtt-10x-x-109">overlap</span><span class="cmtt-10x-x-109">_degree.py</span></h5> <!--l. 3--><p class="noindent" ><span diff --git a/doc/html/mammult_docsu16.html b/doc/html/mammult_docsu16.html index 45024e4..ec3b96d 100644 --- a/doc/html/mammult_docsu16.html +++ b/doc/html/mammult_docsu16.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -18,7 +18,7 @@ href="mammult_docsu15.html#tailmammult_docsu15.html" >prev-tail</a>] [<a href="#tailmammult_docsu16.html">tail</a>] [<a href="mammult_docsu14.html#mammult_docsu16.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x19-180001.1.3"></a><span + id="x20-190001.1.3"></a><span class="cmtt-10x-x-109">cartography</span><span class="cmtt-10x-x-109">_from</span><span class="cmtt-10x-x-109">_layers.py</span></h5> diff --git a/doc/html/mammult_docsu17.html b/doc/html/mammult_docsu17.html index 9399878..49f4aff 100644 --- a/doc/html/mammult_docsu17.html +++ b/doc/html/mammult_docsu17.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -18,7 +18,7 @@ href="mammult_docsu16.html#tailmammult_docsu16.html" >prev-tail</a>] [<a href="#tailmammult_docsu17.html">tail</a>] [<a href="mammult_docsu14.html#mammult_docsu17.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x20-190001.1.3"></a><span + id="x21-200001.1.3"></a><span class="cmtt-10x-x-109">cartography</span><span class="cmtt-10x-x-109">_from</span><span class="cmtt-10x-x-109">_deg</span><span diff --git a/doc/html/mammult_docsu18.html b/doc/html/mammult_docsu18.html index 1eed9fc..24175d1 100644 --- a/doc/html/mammult_docsu18.html +++ b/doc/html/mammult_docsu18.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -18,7 +18,7 @@ href="mammult_docsu17.html#tailmammult_docsu17.html" >prev-tail</a>] [<a href="#tailmammult_docsu18.html">tail</a>] [<a href="mammult_docsu14.html#mammult_docsu18.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x21-200001.1.3"></a><span + id="x22-210001.1.3"></a><span class="cmtt-10x-x-109">cartography</span><span class="cmtt-10x-x-109">_from</span><span class="cmtt-10x-x-109">_columns.py</span></h5> @@ -91,12 +91,15 @@ class="cmtt-10x-x-109">http://journals.aps.org/pre/abstract/10.1103/PhysRevE.92. - <!--l. 164--><div class="crosslinks"><p class="noindent">[<a + + + + <!--l. 169--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu19.html" >next</a>] [<a href="mammult_docsu17.html" >prev</a>] [<a href="mammult_docsu17.html#tailmammult_docsu17.html" >prev-tail</a>] [<a href="mammult_docsu18.html" >front</a>] [<a href="mammult_docsu14.html#mammult_docsu18.html" >up</a>] </p></div> -<!--l. 164--><p class="indent" > <a +<!--l. 169--><p class="indent" > <a id="tailmammult_docsu18.html"></a> </body></html> diff --git a/doc/html/mammult_docsu19.html b/doc/html/mammult_docsu19.html index 0d431f5..d3f75c8 100644 --- a/doc/html/mammult_docsu19.html +++ b/doc/html/mammult_docsu19.html @@ -7,33 +7,33 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > - <!--l. 164--><div class="crosslinks"><p class="noindent">[<a + <!--l. 169--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu20.html" >next</a>] [<a href="mammult_docsu18.html" >prev</a>] [<a href="mammult_docsu18.html#tailmammult_docsu18.html" >prev-tail</a>] [<a href="#tailmammult_docsu19.html">tail</a>] [<a href="mammult_docse1.html#mammult_docsu19.html" >up</a>] </p></div> <h4 class="subsectionHead"><span class="titlemark">1.1.4 </span> <a - id="x22-210001.1.4"></a>Edge overlap, reinforcement</h4> -<!--l. 165--><p class="noindent" >This section includes programs to compute the egde overlap and to evaulate the + id="x23-220001.1.4"></a>Edge overlap, reinforcement</h4> +<!--l. 170--><p class="noindent" >This section includes programs to compute the egde overlap and to evaulate the edge reinforcement effect. <!--l. 4--><p class="noindent" > <div class="subsubsectionTOCS">    <span class="subsubsectionToc" ><a -href="mammult_docsu20.html#x23-220001.1.4"><span +href="mammult_docsu20.html#x24-230001.1.4"><span class="cmtt-10x-x-109">edge</span><span class="cmtt-10x-x-109">_overlap.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu21.html#x24-230001.1.4"><span +href="mammult_docsu21.html#x25-240001.1.4"><span class="cmtt-10x-x-109">avg</span><span class="cmtt-10x-x-109">_edge</span><span class="cmtt-10x-x-109">_overlap.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu22.html#x25-240001.1.4"><span +href="mammult_docsu22.html#x26-250001.1.4"><span class="cmtt-10x-x-109">reinforcement.py</span></a></span> </div> @@ -41,12 +41,12 @@ class="cmtt-10x-x-109">reinforcement.py</span></a></span> - <!--l. 172--><div class="crosslinks"><p class="noindent">[<a + <!--l. 178--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu20.html" >next</a>] [<a href="mammult_docsu18.html" >prev</a>] [<a href="mammult_docsu18.html#tailmammult_docsu18.html" >prev-tail</a>] [<a href="mammult_docsu19.html" >front</a>] [<a href="mammult_docse1.html#mammult_docsu19.html" >up</a>] </p></div> -<!--l. 172--><p class="indent" > <a +<!--l. 178--><p class="indent" > <a id="tailmammult_docsu19.html"></a> </body></html> diff --git a/doc/html/mammult_docsu2.html b/doc/html/mammult_docsu2.html index b28c5ff..17fc922 100644 --- a/doc/html/mammult_docsu2.html +++ b/doc/html/mammult_docsu2.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -18,7 +18,7 @@ href="mammult_docsu1.html#tailmammult_docsu1.html" >prev-tail</a>] [<a href="#tailmammult_docsu2.html">tail</a>] [<a href="mammult_docsu1.html#mammult_docsu2.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x5-40001.1.1"></a><span + id="x6-50001.1.1"></a><span class="cmtt-10x-x-109">node</span><span class="cmtt-10x-x-109">_activity.py</span></h5> <!--l. 7--><p class="noindent" ><span @@ -58,6 +58,9 @@ class="cmti-10x-x-109">_ID </span>and <span class="cmti-10x-x-109">dest</span><span class="cmti-10x-x-109">_ID </span>are the IDs of the two endpoints of an edge. + + + <!--l. 22--><p class="noindent" ><span class="cmbx-10x-x-109">OUTPUT</span> <!--l. 22--><p class="indent" > A list of lines, where the n-th line is the value of activity of the n-th node, diff --git a/doc/html/mammult_docsu20.html b/doc/html/mammult_docsu20.html index b1336c1..de348ae 100644 --- a/doc/html/mammult_docsu20.html +++ b/doc/html/mammult_docsu20.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -18,7 +18,7 @@ href="mammult_docsu19.html#tailmammult_docsu19.html" >prev-tail</a>] [<a href="#tailmammult_docsu20.html">tail</a>] [<a href="mammult_docsu19.html#mammult_docsu20.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x23-220001.1.4"></a><span + id="x24-230001.1.4"></a><span class="cmtt-10x-x-109">edge</span><span class="cmtt-10x-x-109">_overlap.py</span></h5> <!--l. 4--><p class="noindent" ><span diff --git a/doc/html/mammult_docsu21.html b/doc/html/mammult_docsu21.html index 4ddb327..94b5d49 100644 --- a/doc/html/mammult_docsu21.html +++ b/doc/html/mammult_docsu21.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -18,7 +18,7 @@ href="mammult_docsu20.html#tailmammult_docsu20.html" >prev-tail</a>] [<a href="#tailmammult_docsu21.html">tail</a>] [<a href="mammult_docsu19.html#mammult_docsu21.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x24-230001.1.4"></a><span + id="x25-240001.1.4"></a><span class="cmtt-10x-x-109">avg</span><span class="cmtt-10x-x-109">_edge</span><span class="cmtt-10x-x-109">_overlap.py</span></h5> diff --git a/doc/html/mammult_docsu22.html b/doc/html/mammult_docsu22.html index 2647158..ab98c61 100644 --- a/doc/html/mammult_docsu22.html +++ b/doc/html/mammult_docsu22.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -18,7 +18,7 @@ href="mammult_docsu21.html#tailmammult_docsu21.html" >prev-tail</a>] [<a href="#tailmammult_docsu22.html">tail</a>] [<a href="mammult_docsu19.html#mammult_docsu22.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x25-240001.1.4"></a><span + id="x26-250001.1.4"></a><span class="cmtt-10x-x-109">reinforcement.py</span></h5> <!--l. 7--><p class="noindent" ><span class="cmbx-10x-x-109">NAME</span> @@ -81,12 +81,15 @@ class="cmtt-10x-x-109">http://journals.aps.org/pre/abstract/10.1103/PhysRevE.89. - <!--l. 172--><div class="crosslinks"><p class="noindent">[<a + + + + <!--l. 178--><div class="crosslinks"><p class="noindent">[<a href="mammult_docse2.html" >next</a>] [<a href="mammult_docsu21.html" >prev</a>] [<a href="mammult_docsu21.html#tailmammult_docsu21.html" >prev-tail</a>] [<a href="mammult_docsu22.html" >front</a>] [<a href="mammult_docsu19.html#mammult_docsu22.html" >up</a>] </p></div> -<!--l. 172--><p class="indent" > <a +<!--l. 178--><p class="indent" > <a id="tailmammult_docsu22.html"></a> </body></html> diff --git a/doc/html/mammult_docsu23.html b/doc/html/mammult_docsu23.html index 432b1fc..b4ccd93 100644 --- a/doc/html/mammult_docsu23.html +++ b/doc/html/mammult_docsu23.html @@ -7,34 +7,34 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > - <!--l. 174--><div class="crosslinks"><p class="noindent">[<a + <!--l. 180--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu24.html" >next</a>] [<a href="mammult_docse2.html" >prev</a>] [<a href="mammult_docse2.html#tailmammult_docse2.html" >prev-tail</a>] [<a href="#tailmammult_docsu23.html">tail</a>] [<a href="mammult_docse2.html#mammult_docsu23.html" >up</a>] </p></div> <h4 class="subsectionHead"><span class="titlemark">1.2.1 </span> <a - id="x27-260001.2.1"></a>Node ranking</h4> -<!--l. 176--><p class="noindent" >This section includes various utilities to compute and compare node rankings + id="x28-270001.2.1"></a>Node ranking</h4> +<!--l. 182--><p class="noindent" >This section includes various utilities to compute and compare node rankings induced by any generic structural node property, including degree at different layers. <!--l. 3--><p class="noindent" > <div class="subsubsectionTOCS">    <span class="subsubsectionToc" ><a -href="mammult_docsu24.html#x28-270001.2.1"><span +href="mammult_docsu24.html#x29-280001.2.1"><span class="cmtt-10x-x-109">rank</span><span class="cmtt-10x-x-109">_nodes.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu25.html#x29-280001.2.1"><span +href="mammult_docsu25.html#x30-290001.2.1"><span class="cmtt-10x-x-109">rank</span><span class="cmtt-10x-x-109">_nodes</span><span class="cmtt-10x-x-109">_thresh.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu26.html#x30-290001.2.1"><span +href="mammult_docsu26.html#x31-300001.2.1"><span class="cmtt-10x-x-109">rank</span><span class="cmtt-10x-x-109">_occurrence.py</span></a></span> </div> @@ -43,12 +43,12 @@ class="cmtt-10x-x-109">_occurrence.py</span></a></span> - <!--l. 184--><div class="crosslinks"><p class="noindent">[<a + <!--l. 191--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu24.html" >next</a>] [<a href="mammult_docse2.html" >prev</a>] [<a href="mammult_docse2.html#tailmammult_docse2.html" >prev-tail</a>] [<a href="mammult_docsu23.html" >front</a>] [<a href="mammult_docse2.html#mammult_docsu23.html" >up</a>] </p></div> -<!--l. 184--><p class="indent" > <a +<!--l. 191--><p class="indent" > <a id="tailmammult_docsu23.html"></a> </body></html> diff --git a/doc/html/mammult_docsu24.html b/doc/html/mammult_docsu24.html index efdd3bb..ade7f9e 100644 --- a/doc/html/mammult_docsu24.html +++ b/doc/html/mammult_docsu24.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -21,7 +21,7 @@ href="mammult_docsu23.html#mammult_docsu24.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x28-270001.2.1"></a><span + id="x29-280001.2.1"></a><span class="cmtt-10x-x-109">rank</span><span class="cmtt-10x-x-109">_nodes.py</span></h5> <!--l. 3--><p class="noindent" ><span diff --git a/doc/html/mammult_docsu25.html b/doc/html/mammult_docsu25.html index 2f21cb8..73e0214 100644 --- a/doc/html/mammult_docsu25.html +++ b/doc/html/mammult_docsu25.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -18,7 +18,7 @@ href="mammult_docsu24.html#tailmammult_docsu24.html" >prev-tail</a>] [<a href="#tailmammult_docsu25.html">tail</a>] [<a href="mammult_docsu23.html#mammult_docsu25.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x29-280001.2.1"></a><span + id="x30-290001.2.1"></a><span class="cmtt-10x-x-109">rank</span><span class="cmtt-10x-x-109">_nodes</span><span class="cmtt-10x-x-109">_thresh.py</span></h5> diff --git a/doc/html/mammult_docsu26.html b/doc/html/mammult_docsu26.html index 196d267..1d7aad5 100644 --- a/doc/html/mammult_docsu26.html +++ b/doc/html/mammult_docsu26.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -18,7 +18,7 @@ href="mammult_docsu25.html#tailmammult_docsu25.html" >prev-tail</a>] [<a href="#tailmammult_docsu26.html">tail</a>] [<a href="mammult_docsu23.html#mammult_docsu26.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x30-290001.2.1"></a><span + id="x31-300001.2.1"></a><span class="cmtt-10x-x-109">rank</span><span class="cmtt-10x-x-109">_occurrence.py</span></h5> <!--l. 3--><p class="noindent" ><span @@ -76,12 +76,15 @@ class="cmtt-10x-x-109">http://journals.aps.org/pre/abstract/10.1103/PhysRevE.92. - <!--l. 184--><div class="crosslinks"><p class="noindent">[<a + + + + <!--l. 191--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu27.html" >next</a>] [<a href="mammult_docsu25.html" >prev</a>] [<a href="mammult_docsu25.html#tailmammult_docsu25.html" >prev-tail</a>] [<a href="mammult_docsu26.html" >front</a>] [<a href="mammult_docsu23.html#mammult_docsu26.html" >up</a>] </p></div> -<!--l. 184--><p class="indent" > <a +<!--l. 191--><p class="indent" > <a id="tailmammult_docsu26.html"></a> </body></html> diff --git a/doc/html/mammult_docsu27.html b/doc/html/mammult_docsu27.html index caa7357..0c4a19d 100644 --- a/doc/html/mammult_docsu27.html +++ b/doc/html/mammult_docsu27.html @@ -7,32 +7,32 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > - <!--l. 184--><div class="crosslinks"><p class="noindent">[<a + <!--l. 191--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu28.html" >next</a>] [<a href="mammult_docsu26.html" >prev</a>] [<a href="mammult_docsu26.html#tailmammult_docsu26.html" >prev-tail</a>] [<a href="#tailmammult_docsu27.html">tail</a>] [<a href="mammult_docse2.html#mammult_docsu27.html" >up</a>] </p></div> <h4 class="subsectionHead"><span class="titlemark">1.2.2 </span> <a - id="x31-300001.2.2"></a>Interlayer degree correlation coefficients</h4> -<!--l. 186--><p class="noindent" >This section includes programs for the computation of various inter-layer degree + id="x32-310001.2.2"></a>Interlayer degree correlation coefficients</h4> +<!--l. 193--><p class="noindent" >This section includes programs for the computation of various inter-layer degree correlation coefficients. <!--l. 4--><p class="noindent" > <div class="subsubsectionTOCS">    <span class="subsubsectionToc" ><a -href="mammult_docsu28.html#x32-310001.2.2"><span +href="mammult_docsu28.html#x33-320001.2.2"><span class="cmtt-10x-x-109">compute</span><span class="cmtt-10x-x-109">_pearson.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu29.html#x33-320001.2.2"><span +href="mammult_docsu29.html#x34-330001.2.2"><span class="cmtt-10x-x-109">compute</span><span class="cmtt-10x-x-109">_rho.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu30.html#x34-330001.2.2"><span +href="mammult_docsu30.html#x35-340001.2.2"><span class="cmtt-10x-x-109">compute</span><span class="cmtt-10x-x-109">_tau.py</span></a></span> </div> @@ -41,12 +41,12 @@ class="cmtt-10x-x-109">_tau.py</span></a></span> - <!--l. 194--><div class="crosslinks"><p class="noindent">[<a + <!--l. 202--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu28.html" >next</a>] [<a href="mammult_docsu26.html" >prev</a>] [<a href="mammult_docsu26.html#tailmammult_docsu26.html" >prev-tail</a>] [<a href="mammult_docsu27.html" >front</a>] [<a href="mammult_docse2.html#mammult_docsu27.html" >up</a>] </p></div> -<!--l. 194--><p class="indent" > <a +<!--l. 202--><p class="indent" > <a id="tailmammult_docsu27.html"></a> </body></html> diff --git a/doc/html/mammult_docsu28.html b/doc/html/mammult_docsu28.html index bd4ed03..0444079 100644 --- a/doc/html/mammult_docsu28.html +++ b/doc/html/mammult_docsu28.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -18,7 +18,7 @@ href="mammult_docsu27.html#tailmammult_docsu27.html" >prev-tail</a>] [<a href="#tailmammult_docsu28.html">tail</a>] [<a href="mammult_docsu27.html#mammult_docsu28.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x32-310001.2.2"></a><span + id="x33-320001.2.2"></a><span class="cmtt-10x-x-109">compute</span><span class="cmtt-10x-x-109">_pearson.py</span></h5> <!--l. 4--><p class="noindent" ><span diff --git a/doc/html/mammult_docsu29.html b/doc/html/mammult_docsu29.html index 6857ebf..5fee698 100644 --- a/doc/html/mammult_docsu29.html +++ b/doc/html/mammult_docsu29.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -18,7 +18,7 @@ href="mammult_docsu28.html#tailmammult_docsu28.html" >prev-tail</a>] [<a href="#tailmammult_docsu29.html">tail</a>] [<a href="mammult_docsu27.html#mammult_docsu29.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x33-320001.2.2"></a><span + id="x34-330001.2.2"></a><span class="cmtt-10x-x-109">compute</span><span class="cmtt-10x-x-109">_rho.py</span></h5> <!--l. 3--><p class="noindent" ><span diff --git a/doc/html/mammult_docsu3.html b/doc/html/mammult_docsu3.html index ceaf41d..15f61bd 100644 --- a/doc/html/mammult_docsu3.html +++ b/doc/html/mammult_docsu3.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -18,7 +18,7 @@ href="mammult_docsu2.html#tailmammult_docsu2.html" >prev-tail</a>] [<a href="#tailmammult_docsu3.html">tail</a>] [<a href="mammult_docsu1.html#mammult_docsu3.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x6-50001.1.1"></a><span + id="x7-60001.1.1"></a><span class="cmtt-10x-x-109">layer</span><span class="cmtt-10x-x-109">_activity.py</span></h5> <!--l. 8--><p class="noindent" ><span diff --git a/doc/html/mammult_docsu30.html b/doc/html/mammult_docsu30.html index f670867..e2e2e09 100644 --- a/doc/html/mammult_docsu30.html +++ b/doc/html/mammult_docsu30.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -18,7 +18,7 @@ href="mammult_docsu29.html#tailmammult_docsu29.html" >prev-tail</a>] [<a href="#tailmammult_docsu30.html">tail</a>] [<a href="mammult_docsu27.html#mammult_docsu30.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x34-330001.2.2"></a><span + id="x35-340001.2.2"></a><span class="cmtt-10x-x-109">compute</span><span class="cmtt-10x-x-109">_tau.py</span></h5> <!--l. 3--><p class="noindent" ><span @@ -89,12 +89,15 @@ class="cmtt-10x-x-109">http://journals.aps.org/pre/abstract/10.1103/PhysRevE.90. - <!--l. 194--><div class="crosslinks"><p class="noindent">[<a + + + + <!--l. 202--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu31.html" >next</a>] [<a href="mammult_docsu29.html" >prev</a>] [<a href="mammult_docsu29.html#tailmammult_docsu29.html" >prev-tail</a>] [<a href="mammult_docsu30.html" >front</a>] [<a href="mammult_docsu27.html#mammult_docsu30.html" >up</a>] </p></div> -<!--l. 194--><p class="indent" > <a +<!--l. 202--><p class="indent" > <a id="tailmammult_docsu30.html"></a> </body></html> diff --git a/doc/html/mammult_docsu31.html b/doc/html/mammult_docsu31.html index 0aad436..eb66846 100644 --- a/doc/html/mammult_docsu31.html +++ b/doc/html/mammult_docsu31.html @@ -7,41 +7,41 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > - <!--l. 194--><div class="crosslinks"><p class="noindent">[<a + <!--l. 202--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu32.html" >next</a>] [<a href="mammult_docsu30.html" >prev</a>] [<a href="mammult_docsu30.html#tailmammult_docsu30.html" >prev-tail</a>] [<a href="#tailmammult_docsu31.html">tail</a>] [<a href="mammult_docse2.html#mammult_docsu31.html" >up</a>] </p></div> <h4 class="subsectionHead"><span class="titlemark">1.2.3 </span> <a - id="x35-340001.2.3"></a>Interlayer degree correlation functions</h4> -<!--l. 196--><p class="noindent" >This section includes programs to compute intra-layer and inter-layer degree + id="x36-350001.2.3"></a>Interlayer degree correlation functions</h4> +<!--l. 204--><p class="noindent" >This section includes programs to compute intra-layer and inter-layer degree correlation functions, and to fit those functions with a power-law. <!--l. 1--><p class="indent" > M <div class="subsubsectionTOCS">    <span class="subsubsectionToc" ><a -href="mammult_docsu32.html#x36-350001.2.3"><span +href="mammult_docsu32.html#x37-360001.2.3"><span class="cmtt-10x-x-109">dump</span><span class="cmtt-10x-x-109">_k</span><span class="cmtt-10x-x-109">_q</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu33.html#x37-360001.2.3"><span +href="mammult_docsu33.html#x38-370001.2.3"><span class="cmtt-10x-x-109">knn</span><span class="cmtt-10x-x-109">_q</span><span class="cmtt-10x-x-109">_from</span><span class="cmtt-10x-x-109">_layers.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu34.html#x38-370001.2.3"><span +href="mammult_docsu34.html#x39-380001.2.3"><span class="cmtt-10x-x-109">knn</span><span class="cmtt-10x-x-109">_q</span><span class="cmtt-10x-x-109">_from</span><span class="cmtt-10x-x-109">_degrees.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu35.html#x39-380001.2.3"><span +href="mammult_docsu35.html#x40-390001.2.3"><span class="cmtt-10x-x-109">fit</span><span class="cmtt-10x-x-109">_knn</span></a></span> </div> @@ -51,12 +51,12 @@ class="cmtt-10x-x-109">_knn</span></a></span> - <!--l. 208--><div class="crosslinks"><p class="noindent">[<a + <!--l. 217--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu32.html" >next</a>] [<a href="mammult_docsu30.html" >prev</a>] [<a href="mammult_docsu30.html#tailmammult_docsu30.html" >prev-tail</a>] [<a href="mammult_docsu31.html" >front</a>] [<a href="mammult_docse2.html#mammult_docsu31.html" >up</a>] </p></div> -<!--l. 208--><p class="indent" > <a +<!--l. 217--><p class="indent" > <a id="tailmammult_docsu31.html"></a> </body></html> diff --git a/doc/html/mammult_docsu32.html b/doc/html/mammult_docsu32.html index bc169c9..646d34d 100644 --- a/doc/html/mammult_docsu32.html +++ b/doc/html/mammult_docsu32.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -18,7 +18,7 @@ href="mammult_docsu31.html#tailmammult_docsu31.html" >prev-tail</a>] [<a href="#tailmammult_docsu32.html">tail</a>] [<a href="mammult_docsu31.html#mammult_docsu32.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x36-350001.2.3"></a><span + id="x37-360001.2.3"></a><span class="cmtt-10x-x-109">dump</span><span class="cmtt-10x-x-109">_k</span><span class="cmtt-10x-x-109">_q</span></h5> diff --git a/doc/html/mammult_docsu33.html b/doc/html/mammult_docsu33.html index 039a355..c4526d4 100644 --- a/doc/html/mammult_docsu33.html +++ b/doc/html/mammult_docsu33.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -18,7 +18,7 @@ href="mammult_docsu32.html#tailmammult_docsu32.html" >prev-tail</a>] [<a href="#tailmammult_docsu33.html">tail</a>] [<a href="mammult_docsu31.html#mammult_docsu33.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x37-360001.2.3"></a><span + id="x38-370001.2.3"></a><span class="cmtt-10x-x-109">knn</span><span class="cmtt-10x-x-109">_q</span><span class="cmtt-10x-x-109">_from</span><span diff --git a/doc/html/mammult_docsu34.html b/doc/html/mammult_docsu34.html index 4c36b37..5bcdc4a 100644 --- a/doc/html/mammult_docsu34.html +++ b/doc/html/mammult_docsu34.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -18,7 +18,7 @@ href="mammult_docsu33.html#tailmammult_docsu33.html" >prev-tail</a>] [<a href="#tailmammult_docsu34.html">tail</a>] [<a href="mammult_docsu31.html#mammult_docsu34.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x38-370001.2.3"></a><span + id="x39-380001.2.3"></a><span class="cmtt-10x-x-109">knn</span><span class="cmtt-10x-x-109">_q</span><span class="cmtt-10x-x-109">_from</span><span diff --git a/doc/html/mammult_docsu35.html b/doc/html/mammult_docsu35.html index c1c4586..5bca913 100644 --- a/doc/html/mammult_docsu35.html +++ b/doc/html/mammult_docsu35.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -18,7 +18,7 @@ href="mammult_docsu34.html#tailmammult_docsu34.html" >prev-tail</a>] [<a href="#tailmammult_docsu35.html">tail</a>] [<a href="mammult_docsu31.html#mammult_docsu35.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x39-380001.2.3"></a><span + id="x40-390001.2.3"></a><span class="cmtt-10x-x-109">fit</span><span class="cmtt-10x-x-109">_knn</span></h5> <!--l. 4--><p class="noindent" ><span @@ -129,12 +129,15 @@ class="cmtt-10x-x-109">http://journals.aps.org/pre/abstract/10.1103/PhysRevE.90. - <!--l. 208--><div class="crosslinks"><p class="noindent">[<a + + + + <!--l. 217--><div class="crosslinks"><p class="noindent">[<a href="mammult_docch2.html" >next</a>] [<a href="mammult_docsu34.html" >prev</a>] [<a href="mammult_docsu34.html#tailmammult_docsu34.html" >prev-tail</a>] [<a href="mammult_docsu35.html" >front</a>] [<a href="mammult_docsu31.html#mammult_docsu35.html" >up</a>] </p></div> -<!--l. 208--><p class="indent" > <a +<!--l. 217--><p class="indent" > <a id="tailmammult_docsu35.html"></a> </body></html> diff --git a/doc/html/mammult_docsu36.html b/doc/html/mammult_docsu36.html index 773fe1b..5db6778 100644 --- a/doc/html/mammult_docsu36.html +++ b/doc/html/mammult_docsu36.html @@ -7,34 +7,34 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > - <!--l. 212--><div class="crosslinks"><p class="noindent">[<a + <!--l. 221--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu37.html" >next</a>] [<a href="mammult_docse3.html" >prev</a>] [<a href="mammult_docse3.html#tailmammult_docse3.html" >prev-tail</a>] [<a href="#tailmammult_docsu36.html">tail</a>] [<a href="mammult_docse3.html#mammult_docsu36.html" >up</a>] </p></div> <h4 class="subsectionHead"><span class="titlemark">2.1.1 </span> <a - id="x42-410002.1.1"></a>Null-models of node and layer activity</h4> + id="x43-420002.1.1"></a>Null-models of node and layer activity</h4> <!--l. 3--><p class="noindent" > <div class="subsubsectionTOCS">    <span class="subsubsectionToc" ><a -href="mammult_docsu37.html#x43-420002.1.1"><span +href="mammult_docsu37.html#x44-430002.1.1"><span class="cmtt-10x-x-109">model</span><span class="cmtt-10x-x-109">_hypergeometric.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu38.html#x44-430002.1.1"><span +href="mammult_docsu38.html#x45-440002.1.1"><span class="cmtt-10x-x-109">model</span><span class="cmtt-10x-x-109">_MDM.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu39.html#x45-440002.1.1"><span +href="mammult_docsu39.html#x46-450002.1.1"><span class="cmtt-10x-x-109">model</span><span class="cmtt-10x-x-109">_MSM.py</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu40.html#x46-450002.1.1"><span +href="mammult_docsu40.html#x47-460002.1.1"><span class="cmtt-10x-x-109">model</span><span class="cmtt-10x-x-109">_layer</span><span class="cmtt-10x-x-109">_growth.py</span></a></span> @@ -45,12 +45,12 @@ class="cmtt-10x-x-109">_growth.py</span></a></span> - <!--l. 220--><div class="crosslinks"><p class="noindent">[<a + <!--l. 230--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu37.html" >next</a>] [<a href="mammult_docse3.html" >prev</a>] [<a href="mammult_docse3.html#tailmammult_docse3.html" >prev-tail</a>] [<a href="mammult_docsu36.html" >front</a>] [<a href="mammult_docse3.html#mammult_docsu36.html" >up</a>] </p></div> -<!--l. 220--><p class="indent" > <a +<!--l. 230--><p class="indent" > <a id="tailmammult_docsu36.html"></a> </body></html> diff --git a/doc/html/mammult_docsu37.html b/doc/html/mammult_docsu37.html index 6de8b25..1b614af 100644 --- a/doc/html/mammult_docsu37.html +++ b/doc/html/mammult_docsu37.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -21,7 +21,7 @@ href="mammult_docsu36.html#tailmammult_docsu36.html" >prev-tail</a>] [<a href="#tailmammult_docsu37.html">tail</a>] [<a href="mammult_docsu36.html#mammult_docsu37.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x43-420002.1.1"></a><span + id="x44-430002.1.1"></a><span class="cmtt-10x-x-109">model</span><span class="cmtt-10x-x-109">_hypergeometric.py</span></h5> <!--l. 3--><p class="noindent" ><span diff --git a/doc/html/mammult_docsu38.html b/doc/html/mammult_docsu38.html index 0e342ad..f64095f 100644 --- a/doc/html/mammult_docsu38.html +++ b/doc/html/mammult_docsu38.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -18,7 +18,7 @@ href="mammult_docsu37.html#tailmammult_docsu37.html" >prev-tail</a>] [<a href="#tailmammult_docsu38.html">tail</a>] [<a href="mammult_docsu36.html#mammult_docsu38.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x44-430002.1.1"></a><span + id="x45-440002.1.1"></a><span class="cmtt-10x-x-109">model</span><span class="cmtt-10x-x-109">_MDM.py</span></h5> <!--l. 3--><p class="noindent" ><span diff --git a/doc/html/mammult_docsu39.html b/doc/html/mammult_docsu39.html index 6a38bdc..547ec00 100644 --- a/doc/html/mammult_docsu39.html +++ b/doc/html/mammult_docsu39.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -18,7 +18,7 @@ href="mammult_docsu38.html#tailmammult_docsu38.html" >prev-tail</a>] [<a href="#tailmammult_docsu39.html">tail</a>] [<a href="mammult_docsu36.html#mammult_docsu39.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x45-440002.1.1"></a><span + id="x46-450002.1.1"></a><span class="cmtt-10x-x-109">model</span><span class="cmtt-10x-x-109">_MSM.py</span></h5> <!--l. 3--><p class="noindent" ><span diff --git a/doc/html/mammult_docsu4.html b/doc/html/mammult_docsu4.html index e9f2d63..65354e1 100644 --- a/doc/html/mammult_docsu4.html +++ b/doc/html/mammult_docsu4.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -18,7 +18,7 @@ href="mammult_docsu3.html#tailmammult_docsu3.html" >prev-tail</a>] [<a href="#tailmammult_docsu4.html">tail</a>] [<a href="mammult_docsu1.html#mammult_docsu4.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x7-60001.1.1"></a><span + id="x8-70001.1.1"></a><span class="cmtt-10x-x-109">node</span><span class="cmtt-10x-x-109">_activity</span><span class="cmtt-10x-x-109">_vectors.py</span></h5> diff --git a/doc/html/mammult_docsu40.html b/doc/html/mammult_docsu40.html index a8cccba..9768e54 100644 --- a/doc/html/mammult_docsu40.html +++ b/doc/html/mammult_docsu40.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -18,7 +18,7 @@ href="mammult_docsu39.html#tailmammult_docsu39.html" >prev-tail</a>] [<a href="#tailmammult_docsu40.html">tail</a>] [<a href="mammult_docsu36.html#mammult_docsu40.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x46-450002.1.1"></a><span + id="x47-460002.1.1"></a><span class="cmtt-10x-x-109">model</span><span class="cmtt-10x-x-109">_layer</span><span class="cmtt-10x-x-109">_growth.py</span></h5> @@ -127,12 +127,15 @@ class="cmtt-10x-x-109">http://journals.aps.org/pre/abstract/10.1103/PhysRevE.92. - <!--l. 220--><div class="crosslinks"><p class="noindent">[<a + + + + <!--l. 230--><div class="crosslinks"><p class="noindent">[<a href="mammult_docse4.html" >next</a>] [<a href="mammult_docsu39.html" >prev</a>] [<a href="mammult_docsu39.html#tailmammult_docsu39.html" >prev-tail</a>] [<a href="mammult_docsu40.html" >front</a>] [<a href="mammult_docsu36.html#mammult_docsu40.html" >up</a>] </p></div> -<!--l. 220--><p class="indent" > <a +<!--l. 230--><p class="indent" > <a id="tailmammult_docsu40.html"></a> </body></html> diff --git a/doc/html/mammult_docsu41.html b/doc/html/mammult_docsu41.html index 5e82756..e25e547 100644 --- a/doc/html/mammult_docsu41.html +++ b/doc/html/mammult_docsu41.html @@ -7,38 +7,38 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > - <!--l. 222--><div class="crosslinks"><p class="noindent">[<a + <!--l. 232--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu42.html" >next</a>] [<a href="mammult_docse4.html" >prev</a>] [<a href="mammult_docse4.html#tailmammult_docse4.html" >prev-tail</a>] [<a href="#tailmammult_docsu41.html">tail</a>] [<a href="mammult_docse4.html#mammult_docsu41.html" >up</a>] </p></div> <h4 class="subsectionHead"><span class="titlemark">2.2.1 </span> <a - id="x48-470002.2.1"></a>Linear preferential attachment</h4> + id="x49-480002.2.1"></a>Linear preferential attachment</h4> <!--l. 4--><p class="noindent" > <div class="subsubsectionTOCS">    <span class="subsubsectionToc" ><a -href="mammult_docsu42.html#x49-480002.2.1"><span +href="mammult_docsu42.html#x50-490002.2.1"><span class="cmtt-10x-x-109">nibilab</span><span class="cmtt-10x-x-109">_linear</span><span class="cmtt-10x-x-109">_delta</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu43.html#x50-490002.2.1"><span +href="mammult_docsu43.html#x51-500002.2.1"><span class="cmtt-10x-x-109">nibilab</span><span class="cmtt-10x-x-109">_linear</span><span class="cmtt-10x-x-109">_delay</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu44.html#x51-500002.2.1"><span +href="mammult_docsu44.html#x52-510002.2.1"><span class="cmtt-10x-x-109">nibilab</span><span class="cmtt-10x-x-109">_linear</span><span class="cmtt-10x-x-109">_delay</span><span class="cmtt-10x-x-109">_mix</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu45.html#x52-510002.2.1"><span +href="mammult_docsu45.html#x53-520002.2.1"><span class="cmtt-10x-x-109">nibilab</span><span class="cmtt-10x-x-109">_linear</span><span class="cmtt-10x-x-109">_random</span><span @@ -50,12 +50,12 @@ class="cmtt-10x-x-109">_times</span></a></span> - <!--l. 230--><div class="crosslinks"><p class="noindent">[<a + <!--l. 241--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu42.html" >next</a>] [<a href="mammult_docse4.html" >prev</a>] [<a href="mammult_docse4.html#tailmammult_docse4.html" >prev-tail</a>] [<a href="mammult_docsu41.html" >front</a>] [<a href="mammult_docse4.html#mammult_docsu41.html" >up</a>] </p></div> -<!--l. 230--><p class="indent" > <a +<!--l. 241--><p class="indent" > <a id="tailmammult_docsu41.html"></a> </body></html> diff --git a/doc/html/mammult_docsu42.html b/doc/html/mammult_docsu42.html index f3f6862..a2f2456 100644 --- a/doc/html/mammult_docsu42.html +++ b/doc/html/mammult_docsu42.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -18,7 +18,7 @@ href="mammult_docsu41.html#tailmammult_docsu41.html" >prev-tail</a>] [<a href="#tailmammult_docsu42.html">tail</a>] [<a href="mammult_docsu41.html#mammult_docsu42.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x49-480002.2.1"></a><span + id="x50-490002.2.1"></a><span class="cmtt-10x-x-109">nibilab</span><span class="cmtt-10x-x-109">_linear</span><span class="cmtt-10x-x-109">_delta</span></h5> diff --git a/doc/html/mammult_docsu43.html b/doc/html/mammult_docsu43.html index 3da9e4a..c92d96c 100644 --- a/doc/html/mammult_docsu43.html +++ b/doc/html/mammult_docsu43.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -18,7 +18,7 @@ href="mammult_docsu42.html#tailmammult_docsu42.html" >prev-tail</a>] [<a href="#tailmammult_docsu43.html">tail</a>] [<a href="mammult_docsu41.html#mammult_docsu43.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x50-490002.2.1"></a><span + id="x51-500002.2.1"></a><span class="cmtt-10x-x-109">nibilab</span><span class="cmtt-10x-x-109">_linear</span><span class="cmtt-10x-x-109">_delay</span></h5> diff --git a/doc/html/mammult_docsu44.html b/doc/html/mammult_docsu44.html index 363edfd..87cb478 100644 --- a/doc/html/mammult_docsu44.html +++ b/doc/html/mammult_docsu44.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -18,7 +18,7 @@ href="mammult_docsu43.html#tailmammult_docsu43.html" >prev-tail</a>] [<a href="#tailmammult_docsu44.html">tail</a>] [<a href="mammult_docsu41.html#mammult_docsu44.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x51-500002.2.1"></a><span + id="x52-510002.2.1"></a><span class="cmtt-10x-x-109">nibilab</span><span class="cmtt-10x-x-109">_linear</span><span class="cmtt-10x-x-109">_delay</span><span diff --git a/doc/html/mammult_docsu45.html b/doc/html/mammult_docsu45.html index e445814..1565f99 100644 --- a/doc/html/mammult_docsu45.html +++ b/doc/html/mammult_docsu45.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -18,7 +18,7 @@ href="mammult_docsu44.html#tailmammult_docsu44.html" >prev-tail</a>] [<a href="#tailmammult_docsu45.html">tail</a>] [<a href="mammult_docsu41.html#mammult_docsu45.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x52-510002.2.1"></a><span + id="x53-520002.2.1"></a><span class="cmtt-10x-x-109">nibilab</span><span class="cmtt-10x-x-109">_linear</span><span class="cmtt-10x-x-109">_random</span><span @@ -135,12 +135,15 @@ class="cmtt-10x-x-109">http://prl.aps.org/abstract/PRL/v111/i5/e058701</span></a - <!--l. 230--><div class="crosslinks"><p class="noindent">[<a + + + + <!--l. 241--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu46.html" >next</a>] [<a href="mammult_docsu44.html" >prev</a>] [<a href="mammult_docsu44.html#tailmammult_docsu44.html" >prev-tail</a>] [<a href="mammult_docsu45.html" >front</a>] [<a href="mammult_docsu41.html#mammult_docsu45.html" >up</a>] </p></div> -<!--l. 230--><p class="indent" > <a +<!--l. 241--><p class="indent" > <a id="tailmammult_docsu45.html"></a> </body></html> diff --git a/doc/html/mammult_docsu46.html b/doc/html/mammult_docsu46.html index 8665bf5..53b98df 100644 --- a/doc/html/mammult_docsu46.html +++ b/doc/html/mammult_docsu46.html @@ -7,34 +7,34 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > - <!--l. 230--><div class="crosslinks"><p class="noindent">[<a + <!--l. 241--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu47.html" >next</a>] [<a href="mammult_docsu45.html" >prev</a>] [<a href="mammult_docsu45.html#tailmammult_docsu45.html" >prev-tail</a>] [<a href="#tailmammult_docsu46.html">tail</a>] [<a href="mammult_docse4.html#mammult_docsu46.html" >up</a>] </p></div> <h4 class="subsectionHead"><span class="titlemark">2.2.2 </span> <a - id="x53-520002.2.2"></a>Non-linear preferential attachment</h4> + id="x54-530002.2.2"></a>Non-linear preferential attachment</h4> <!--l. 4--><p class="noindent" > <div class="subsubsectionTOCS">    <span class="subsubsectionToc" ><a -href="mammult_docsu47.html#x54-530002.2.2"><span +href="mammult_docsu47.html#x55-540002.2.2"><span class="cmtt-10x-x-109">nibilab</span><span class="cmtt-10x-x-109">_nonlinear</span></a></span> </div> - <!--l. 235--><div class="crosslinks"><p class="noindent">[<a + <!--l. 247--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu47.html" >next</a>] [<a href="mammult_docsu45.html" >prev</a>] [<a href="mammult_docsu45.html#tailmammult_docsu45.html" >prev-tail</a>] [<a href="mammult_docsu46.html" >front</a>] [<a href="mammult_docse4.html#mammult_docsu46.html" >up</a>] </p></div> -<!--l. 235--><p class="indent" > <a +<!--l. 247--><p class="indent" > <a id="tailmammult_docsu46.html"></a> </body></html> diff --git a/doc/html/mammult_docsu47.html b/doc/html/mammult_docsu47.html index f2762fe..b28df01 100644 --- a/doc/html/mammult_docsu47.html +++ b/doc/html/mammult_docsu47.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -18,7 +18,7 @@ href="mammult_docsu46.html#tailmammult_docsu46.html" >prev-tail</a>] [<a href="#tailmammult_docsu47.html">tail</a>] [<a href="mammult_docsu46.html#mammult_docsu47.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x54-530002.2.2"></a><span + id="x55-540002.2.2"></a><span class="cmtt-10x-x-109">nibilab</span><span class="cmtt-10x-x-109">_nonlinear</span></h5> <!--l. 4--><p class="noindent" ><span @@ -131,12 +131,15 @@ class="cmtt-10x-x-109">http://prl.aps.org/abstract/PRL/v111/i5/e058701</span></a - <!--l. 235--><div class="crosslinks"><p class="noindent">[<a + + + + <!--l. 247--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu48.html" >next</a>] [<a href="mammult_docsu46.html" >prev</a>] [<a href="mammult_docsu46.html#tailmammult_docsu46.html" >prev-tail</a>] [<a href="mammult_docsu47.html" >front</a>] [<a href="mammult_docsu46.html#mammult_docsu47.html" >up</a>] </p></div> -<!--l. 235--><p class="indent" > <a +<!--l. 247--><p class="indent" > <a id="tailmammult_docsu47.html"></a> </body></html> diff --git a/doc/html/mammult_docsu48.html b/doc/html/mammult_docsu48.html index 3b6b027..a1354db 100644 --- a/doc/html/mammult_docsu48.html +++ b/doc/html/mammult_docsu48.html @@ -7,22 +7,22 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > - <!--l. 235--><div class="crosslinks"><p class="noindent">[<a + <!--l. 247--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu49.html" >next</a>] [<a href="mammult_docsu47.html" >prev</a>] [<a href="mammult_docsu47.html#tailmammult_docsu47.html" >prev-tail</a>] [<a href="#tailmammult_docsu48.html">tail</a>] [<a href="mammult_docse4.html#mammult_docsu48.html" >up</a>] </p></div> <h4 class="subsectionHead"><span class="titlemark">2.2.3 </span> <a - id="x55-540002.2.3"></a>Utilities</h4> + id="x56-550002.2.3"></a>Utilities</h4> <!--l. 4--><p class="noindent" > <div class="subsubsectionTOCS">    <span class="subsubsectionToc" ><a -href="mammult_docsu49.html#x56-550002.2.3"><span +href="mammult_docsu49.html#x57-560002.2.3"><span class="cmtt-10x-x-109">node</span><span class="cmtt-10x-x-109">_deg</span><span class="cmtt-10x-x-109">_over</span><span @@ -31,12 +31,12 @@ class="cmtt-10x-x-109">_time.py</span></a></span> - <!--l. 239--><div class="crosslinks"><p class="noindent">[<a + <!--l. 252--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu49.html" >next</a>] [<a href="mammult_docsu47.html" >prev</a>] [<a href="mammult_docsu47.html#tailmammult_docsu47.html" >prev-tail</a>] [<a href="mammult_docsu48.html" >front</a>] [<a href="mammult_docse4.html#mammult_docsu48.html" >up</a>] </p></div> -<!--l. 239--><p class="indent" > <a +<!--l. 252--><p class="indent" > <a id="tailmammult_docsu48.html"></a> </body></html> diff --git a/doc/html/mammult_docsu49.html b/doc/html/mammult_docsu49.html index 8b0c98c..416165c 100644 --- a/doc/html/mammult_docsu49.html +++ b/doc/html/mammult_docsu49.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -18,7 +18,7 @@ href="mammult_docsu48.html#tailmammult_docsu48.html" >prev-tail</a>] [<a href="#tailmammult_docsu49.html">tail</a>] [<a href="mammult_docsu48.html#mammult_docsu49.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x56-550002.2.3"></a><span + id="x57-560002.2.3"></a><span class="cmtt-10x-x-109">node</span><span class="cmtt-10x-x-109">_deg</span><span class="cmtt-10x-x-109">_over</span><span @@ -134,12 +134,15 @@ class="cmtt-10x-x-109">http://prl.aps.org/abstract/PRL/v111/i5/e058701</span></a - <!--l. 239--><div class="crosslinks"><p class="noindent">[<a + + + + <!--l. 252--><div class="crosslinks"><p class="noindent">[<a href="mammult_docse5.html" >next</a>] [<a href="mammult_docsu48.html" >prev</a>] [<a href="mammult_docsu48.html#tailmammult_docsu48.html" >prev-tail</a>] [<a href="mammult_docsu49.html" >front</a>] [<a href="mammult_docsu48.html#mammult_docsu49.html" >up</a>] </p></div> -<!--l. 239--><p class="indent" > <a +<!--l. 252--><p class="indent" > <a id="tailmammult_docsu49.html"></a> </body></html> diff --git a/doc/html/mammult_docsu5.html b/doc/html/mammult_docsu5.html index d0df370..76dd920 100644 --- a/doc/html/mammult_docsu5.html +++ b/doc/html/mammult_docsu5.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -18,7 +18,7 @@ href="mammult_docsu4.html#tailmammult_docsu4.html" >prev-tail</a>] [<a href="#tailmammult_docsu5.html">tail</a>] [<a href="mammult_docsu1.html#mammult_docsu5.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x8-70001.1.1"></a><span + id="x9-80001.1.1"></a><span class="cmtt-10x-x-109">layer</span><span class="cmtt-10x-x-109">_activity</span><span class="cmtt-10x-x-109">_vectors.py</span></h5> diff --git a/doc/html/mammult_docsu50.html b/doc/html/mammult_docsu50.html index c165edc..a4fa6f0 100644 --- a/doc/html/mammult_docsu50.html +++ b/doc/html/mammult_docsu50.html @@ -7,26 +7,26 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > - <!--l. 241--><div class="crosslinks"><p class="noindent">[<a + <!--l. 254--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu51.html" >next</a>] [<a href="mammult_docse5.html" >prev</a>] [<a href="mammult_docse5.html#tailmammult_docse5.html" >prev-tail</a>] [<a href="#tailmammult_docsu50.html">tail</a>] [<a href="mammult_docse5.html#mammult_docsu50.html" >up</a>] </p></div> <h4 class="subsectionHead"><span class="titlemark">2.3.1 </span> <a - id="x58-570002.3.1"></a>Models based on simulated annealing</h4> + id="x59-580002.3.1"></a>Models based on simulated annealing</h4> <!--l. 3--><p class="noindent" > <div class="subsubsectionTOCS">    <span class="subsubsectionToc" ><a -href="mammult_docsu51.html#x59-580002.3.1"><span +href="mammult_docsu51.html#x60-590002.3.1"><span class="cmtt-10x-x-109">tune</span><span class="cmtt-10x-x-109">_rho</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu52.html#x60-590002.3.1"><span +href="mammult_docsu52.html#x61-600002.3.1"><span class="cmtt-10x-x-109">tune</span><span class="cmtt-10x-x-109">_qnn</span><span class="cmtt-10x-x-109">_adaptive</span></a></span> @@ -35,12 +35,12 @@ class="cmtt-10x-x-109">_adaptive</span></a></span> - <!--l. 247--><div class="crosslinks"><p class="noindent">[<a + <!--l. 261--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu51.html" >next</a>] [<a href="mammult_docse5.html" >prev</a>] [<a href="mammult_docse5.html#tailmammult_docse5.html" >prev-tail</a>] [<a href="mammult_docsu50.html" >front</a>] [<a href="mammult_docse5.html#mammult_docsu50.html" >up</a>] </p></div> -<!--l. 247--><p class="indent" > <a +<!--l. 261--><p class="indent" > <a id="tailmammult_docsu50.html"></a> </body></html> diff --git a/doc/html/mammult_docsu51.html b/doc/html/mammult_docsu51.html index 7964b96..e1ee9ba 100644 --- a/doc/html/mammult_docsu51.html +++ b/doc/html/mammult_docsu51.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -18,7 +18,7 @@ href="mammult_docsu50.html#tailmammult_docsu50.html" >prev-tail</a>] [<a href="#tailmammult_docsu51.html">tail</a>] [<a href="mammult_docsu50.html#mammult_docsu51.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x59-580002.3.1"></a><span + id="x60-590002.3.1"></a><span class="cmtt-10x-x-109">tune</span><span class="cmtt-10x-x-109">_rho</span></h5> <!--l. 3--><p class="noindent" ><span diff --git a/doc/html/mammult_docsu52.html b/doc/html/mammult_docsu52.html index f7b5637..c72a0f6 100644 --- a/doc/html/mammult_docsu52.html +++ b/doc/html/mammult_docsu52.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -18,7 +18,7 @@ href="mammult_docsu51.html#tailmammult_docsu51.html" >prev-tail</a>] [<a href="#tailmammult_docsu52.html">tail</a>] [<a href="mammult_docsu50.html#mammult_docsu52.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x60-590002.3.1"></a><span + id="x61-600002.3.1"></a><span class="cmtt-10x-x-109">tune</span><span class="cmtt-10x-x-109">_qnn</span><span class="cmtt-10x-x-109">_adaptive</span></h5> @@ -137,12 +137,15 @@ class="cmtt-10x-x-109">http://journals.aps.org/pre/abstract/10.1103/PhysRevE.92. - <!--l. 247--><div class="crosslinks"><p class="noindent">[<a + + + + <!--l. 261--><div class="crosslinks"><p class="noindent">[<a href="mammult_docch3.html" >next</a>] [<a href="mammult_docsu51.html" >prev</a>] [<a href="mammult_docsu51.html#tailmammult_docsu51.html" >prev-tail</a>] [<a href="mammult_docsu52.html" >front</a>] [<a href="mammult_docsu50.html#mammult_docsu52.html" >up</a>] </p></div> -<!--l. 247--><p class="indent" > <a +<!--l. 261--><p class="indent" > <a id="tailmammult_docsu52.html"></a> </body></html> diff --git a/doc/html/mammult_docsu53.html b/doc/html/mammult_docsu53.html index 0f3bf0e..2a2fd27 100644 --- a/doc/html/mammult_docsu53.html +++ b/doc/html/mammult_docsu53.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -18,7 +18,7 @@ href="mammult_docse6.html#tailmammult_docse6.html" >prev-tail</a>] [<a href="#tailmammult_docsu53.html">tail</a>] [<a href="mammult_docse6.html#mammult_docsu53.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x63-620003.1"></a><span + id="x64-630003.1"></a><span class="cmtt-10x-x-109">multiplex</span><span class="cmtt-10x-x-109">_ising</span></h5> <!--l. 7--><p class="noindent" ><span @@ -112,12 +112,15 @@ class="cmtt-10x-x-109">http://arxiv.org/abs/1506.04544</span></a> - <!--l. 253--><div class="crosslinks"><p class="noindent">[<a + + + + <!--l. 268--><div class="crosslinks"><p class="noindent">[<a href="mammult_docse7.html" >next</a>] [<a href="mammult_docse6.html" >prev</a>] [<a href="mammult_docse6.html#tailmammult_docse6.html" >prev-tail</a>] [<a href="mammult_docsu53.html" >front</a>] [<a href="mammult_docse6.html#mammult_docsu53.html" >up</a>] </p></div> -<!--l. 253--><p class="indent" > <a +<!--l. 268--><p class="indent" > <a id="tailmammult_docsu53.html"></a> </body></html> diff --git a/doc/html/mammult_docsu54.html b/doc/html/mammult_docsu54.html index 27a6e41..416234b 100644 --- a/doc/html/mammult_docsu54.html +++ b/doc/html/mammult_docsu54.html @@ -7,33 +7,33 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > - <!--l. 255--><div class="crosslinks"><p class="noindent">[<a + <!--l. 270--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu55.html" >next</a>] [<a href="mammult_docse7.html" >prev</a>] [<a href="mammult_docse7.html#tailmammult_docse7.html" >prev-tail</a>] [<a href="#tailmammult_docsu54.html">tail</a>] [<a href="mammult_docse7.html#mammult_docsu54.html" >up</a>] </p></div> <h4 class="subsectionHead"><span class="titlemark">3.2.1 </span> <a - id="x65-640003.2.1"></a>Stationary distribution</h4> + id="x66-650003.2.1"></a>Stationary distribution</h4> <!--l. 7--><p class="noindent" > <div class="subsubsectionTOCS">    <span class="subsubsectionToc" ><a -href="mammult_docsu55.html#x66-650003.2.1"><span +href="mammult_docsu55.html#x67-660003.2.1"><span class="cmtt-10x-x-109">statdistr2</span></a></span> </div> - <!--l. 259--><div class="crosslinks"><p class="noindent">[<a + <!--l. 275--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu55.html" >next</a>] [<a href="mammult_docse7.html" >prev</a>] [<a href="mammult_docse7.html#tailmammult_docse7.html" >prev-tail</a>] [<a href="mammult_docsu54.html" >front</a>] [<a href="mammult_docse7.html#mammult_docsu54.html" >up</a>] </p></div> -<!--l. 259--><p class="indent" > <a +<!--l. 275--><p class="indent" > <a id="tailmammult_docsu54.html"></a> </body></html> diff --git a/doc/html/mammult_docsu55.html b/doc/html/mammult_docsu55.html index 8d25965..4a1be72 100644 --- a/doc/html/mammult_docsu55.html +++ b/doc/html/mammult_docsu55.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -18,7 +18,7 @@ href="mammult_docsu54.html#tailmammult_docsu54.html" >prev-tail</a>] [<a href="#tailmammult_docsu55.html">tail</a>] [<a href="mammult_docsu54.html#mammult_docsu55.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x66-650003.2.1"></a><span + id="x67-660003.2.1"></a><span class="cmtt-10x-x-109">statdistr2</span></h5> <!--l. 7--><p class="noindent" ><span class="cmbx-10x-x-109">NAME</span> @@ -110,12 +110,15 @@ class="cmtt-10x-x-109">http://arxiv.org/abs/1505.01378</span></a> - <!--l. 259--><div class="crosslinks"><p class="noindent">[<a + + + + <!--l. 275--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu56.html" >next</a>] [<a href="mammult_docsu54.html" >prev</a>] [<a href="mammult_docsu54.html#tailmammult_docsu54.html" >prev-tail</a>] [<a href="mammult_docsu55.html" >front</a>] [<a href="mammult_docsu54.html#mammult_docsu55.html" >up</a>] </p></div> -<!--l. 259--><p class="indent" > <a +<!--l. 275--><p class="indent" > <a id="tailmammult_docsu55.html"></a> </body></html> diff --git a/doc/html/mammult_docsu56.html b/doc/html/mammult_docsu56.html index 6f3af3b..c45b1bf 100644 --- a/doc/html/mammult_docsu56.html +++ b/doc/html/mammult_docsu56.html @@ -7,37 +7,37 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > - <!--l. 259--><div class="crosslinks"><p class="noindent">[<a + <!--l. 275--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu57.html" >next</a>] [<a href="mammult_docsu55.html" >prev</a>] [<a href="mammult_docsu55.html#tailmammult_docsu55.html" >prev-tail</a>] [<a href="#tailmammult_docsu56.html">tail</a>] [<a href="mammult_docse7.html#mammult_docsu56.html" >up</a>] </p></div> <h4 class="subsectionHead"><span class="titlemark">3.2.2 </span> <a - id="x67-660003.2.2"></a>Entropy rate</h4> + id="x68-670003.2.2"></a>Entropy rate</h4> <!--l. 7--><p class="noindent" > <div class="subsubsectionTOCS">    <span class="subsubsectionToc" ><a -href="mammult_docsu57.html#x68-670003.2.2"><span +href="mammult_docsu57.html#x69-680003.2.2"><span class="cmtt-10x-x-109">entropyrate2add</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu58.html#x69-680003.2.2"><span +href="mammult_docsu58.html#x70-690003.2.2"><span class="cmtt-10x-x-109">entropyrate2mult</span></a></span> <br />    <span class="subsubsectionToc" ><a -href="mammult_docsu59.html#x70-690003.2.2"><span +href="mammult_docsu59.html#x71-700003.2.2"><span class="cmtt-10x-x-109">entropyrate2int</span></a></span> </div> -<!--l. 265--><div class="crosslinks"><p class="noindent">[<a +<!--l. 282--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu57.html" >next</a>] [<a href="mammult_docsu55.html" >prev</a>] [<a href="mammult_docsu55.html#tailmammult_docsu55.html" >prev-tail</a>] [<a href="mammult_docsu56.html" >front</a>] [<a href="mammult_docse7.html#mammult_docsu56.html" >up</a>] </p></div> -<!--l. 265--><p class="indent" > <a +<!--l. 282--><p class="indent" > <a id="tailmammult_docsu56.html"></a> </body></html> diff --git a/doc/html/mammult_docsu57.html b/doc/html/mammult_docsu57.html index 466706d..fbbe555 100644 --- a/doc/html/mammult_docsu57.html +++ b/doc/html/mammult_docsu57.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -18,7 +18,7 @@ href="mammult_docsu56.html#tailmammult_docsu56.html" >prev-tail</a>] [<a href="#tailmammult_docsu57.html">tail</a>] [<a href="mammult_docsu56.html#mammult_docsu57.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x68-670003.2.2"></a><span + id="x69-680003.2.2"></a><span class="cmtt-10x-x-109">entropyrate2add</span></h5> <!--l. 7--><p class="noindent" ><span class="cmbx-10x-x-109">NAME</span> diff --git a/doc/html/mammult_docsu58.html b/doc/html/mammult_docsu58.html index 8e54059..3818d3c 100644 --- a/doc/html/mammult_docsu58.html +++ b/doc/html/mammult_docsu58.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -18,7 +18,7 @@ href="mammult_docsu57.html#tailmammult_docsu57.html" >prev-tail</a>] [<a href="#tailmammult_docsu58.html">tail</a>] [<a href="mammult_docsu56.html#mammult_docsu58.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x69-680003.2.2"></a><span + id="x70-690003.2.2"></a><span class="cmtt-10x-x-109">entropyrate2mult</span></h5> <!--l. 7--><p class="noindent" ><span class="cmbx-10x-x-109">NAME</span> diff --git a/doc/html/mammult_docsu59.html b/doc/html/mammult_docsu59.html index a929784..7dd6bad 100644 --- a/doc/html/mammult_docsu59.html +++ b/doc/html/mammult_docsu59.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -17,7 +17,7 @@ href="mammult_docsu58.html#tailmammult_docsu58.html" >prev-tail</a>] [<a href="#tailmammult_docsu59.html">tail</a>] [<a href="mammult_docsu56.html#mammult_docsu59.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x70-690003.2.2"></a><span + id="x71-700003.2.2"></a><span class="cmtt-10x-x-109">entropyrate2int</span></h5> <!--l. 7--><p class="noindent" ><span class="cmbx-10x-x-109">NAME</span> @@ -93,11 +93,14 @@ class="cmti-10x-x-109">networks”</span>, arxiv:1505.01378 (2015). <!--l. 24--><p class="indent" > Link to paper: <a href="http://arxiv.org/abs/1505.01378" class="url" ><span class="cmtt-10x-x-109">http://arxiv.org/abs/1505.01378</span></a> - <!--l. 265--><div class="crosslinks"><p class="noindent">[<a + + + + <!--l. 282--><div class="crosslinks"><p class="noindent">[<a href="mammult_docsu58.html" >prev</a>] [<a href="mammult_docsu58.html#tailmammult_docsu58.html" >prev-tail</a>] [<a href="mammult_docsu59.html" >front</a>] [<a href="mammult_docsu56.html#mammult_docsu59.html" >up</a>] </p></div> -<!--l. 265--><p class="indent" > <a +<!--l. 282--><p class="indent" > <a id="tailmammult_docsu59.html"></a> </body></html> diff --git a/doc/html/mammult_docsu6.html b/doc/html/mammult_docsu6.html index fb2c967..354c8b2 100644 --- a/doc/html/mammult_docsu6.html +++ b/doc/html/mammult_docsu6.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -18,7 +18,7 @@ href="mammult_docsu5.html#tailmammult_docsu5.html" >prev-tail</a>] [<a href="#tailmammult_docsu6.html">tail</a>] [<a href="mammult_docsu1.html#mammult_docsu6.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x9-80001.1.1"></a><span + id="x10-90001.1.1"></a><span class="cmtt-10x-x-109">multiplexity.py</span></h5> <!--l. 4--><p class="noindent" ><span class="cmbx-10x-x-109">NAME</span> diff --git a/doc/html/mammult_docsu7.html b/doc/html/mammult_docsu7.html index 7378d93..f6ca425 100644 --- a/doc/html/mammult_docsu7.html +++ b/doc/html/mammult_docsu7.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -18,7 +18,7 @@ href="mammult_docsu6.html#tailmammult_docsu6.html" >prev-tail</a>] [<a href="#tailmammult_docsu7.html">tail</a>] [<a href="mammult_docsu1.html#mammult_docsu7.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x10-90001.1.1"></a><span + id="x11-100001.1.1"></a><span class="cmtt-10x-x-109">hamming</span><span class="cmtt-10x-x-109">_dist.py</span></h5> <!--l. 4--><p class="noindent" ><span diff --git a/doc/html/mammult_docsu8.html b/doc/html/mammult_docsu8.html index dd1069a..a767733 100644 --- a/doc/html/mammult_docsu8.html +++ b/doc/html/mammult_docsu8.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -18,7 +18,7 @@ href="mammult_docsu7.html#tailmammult_docsu7.html" >prev-tail</a>] [<a href="#tailmammult_docsu8.html">tail</a>] [<a href="mammult_docsu1.html#mammult_docsu8.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x11-100001.1.1"></a><span + id="x12-110001.1.1"></a><span class="cmtt-10x-x-109">node</span><span class="cmtt-10x-x-109">_degree</span><span class="cmtt-10x-x-109">_vectors.py</span></h5> diff --git a/doc/html/mammult_docsu9.html b/doc/html/mammult_docsu9.html index 900e27b..af6b608 100644 --- a/doc/html/mammult_docsu9.html +++ b/doc/html/mammult_docsu9.html @@ -7,7 +7,7 @@ <meta name="originator" content="TeX4ht (http://www.cse.ohio-state.edu/~gurari/TeX4ht/)"> <!-- html,index=2,3,4,5,next --> <meta name="src" content="mammult_doc.tex"> -<meta name="date" content="2015-10-19 17:06:00"> +<meta name="date" content="2015-10-19 17:14:00"> <link rel="stylesheet" type="text/css" href="mammult_doc.css"> </head><body > @@ -18,7 +18,7 @@ href="mammult_docsu8.html#tailmammult_docsu8.html" >prev-tail</a>] [<a href="#tailmammult_docsu9.html">tail</a>] [<a href="mammult_docsu1.html#mammult_docsu9.html" >up</a>] </p></div> <h5 class="subsubsectionHead"><a - id="x12-110001.1.1"></a><span + id="x13-120001.1.1"></a><span class="cmtt-10x-x-109">degs</span><span class="cmtt-10x-x-109">_to</span><span class="cmtt-10x-x-109">_binary.py</span></h5> diff --git a/doc/latex/make_doc.sh b/doc/latex/make_doc.sh new file mode 100755 index 0000000..81dea3c --- /dev/null +++ b/doc/latex/make_doc.sh @@ -0,0 +1,6 @@ +#!/bin/bash + +htlatex mammult_doc.tex "html,index=2,3,4,5,next" "" -d../html/ +rm *.html + +pdflatex mammult_doc.tex diff --git a/doc/latex/mammult_doc.pdf b/doc/latex/mammult_doc.pdf Binary files differnew file mode 100644 index 0000000..da74f70 --- /dev/null +++ b/doc/latex/mammult_doc.pdf diff --git a/doc/latex/mammult_doc.tex b/doc/latex/mammult_doc.tex index 4d93d88..77f9174 100644 --- a/doc/latex/mammult_doc.tex +++ b/doc/latex/mammult_doc.tex @@ -121,6 +121,7 @@ \begin{document} \maketitle +\tableofcontents \chapter{Structural descriptors} @@ -142,6 +143,8 @@ normalised Hamming distance, node degree vectors. \input{./latex/structure/activity/degs_to_binary.tex} \input{./latex/structure/activity/degs_to_activity_overlap.tex} +\clearpage + \subsection{Layer aggregation} This section includes programs to obtain various single-layer @@ -149,6 +152,7 @@ aggregated graphs associated to a multiplex network. \input{./latex/structure/metrics/aggregate_layers_w.tex} \input{./latex/structure/metrics/intersect_layers.tex} +\clearpage \subsection{Node degree, participation coefficient, cartography} @@ -160,6 +164,7 @@ diagram of a multiplex. \input{./latex/structure/metrics/cartography_from_layers.tex} \input{./latex/structure/metrics/cartography_from_deg_vectors.tex} \input{./latex/structure/metrics/cartography_from_columns.tex} +\clearpage \subsection{Edge overlap, reinforcement} This section includes programs to compute the egde overlap and to @@ -168,6 +173,7 @@ evaulate the edge reinforcement effect. \input{./latex/structure/metrics/edge_overlap.tex} \input{./latex/structure/metrics/avg_edge_overlap.tex} \input{./latex/structure/reinforcement/reinforcement.tex} +\clearpage \section{Inter-layer degree correlations} @@ -180,6 +186,7 @@ degree at different layers. \input{./latex/structure/correlations/rank_nodes.tex} \input{./latex/structure/correlations/rank_nodes_thresh.tex} \input{./latex/structure/correlations/rank_occurrence.tex} +\clearpage \subsection{Interlayer degree correlation coefficients} @@ -189,6 +196,7 @@ inter-layer degree correlation coefficients. \input{./latex/structure/correlations/compute_pearson.tex} \input{./latex/structure/correlations/compute_rho.tex} \input{./latex/structure/correlations/compute_tau.tex} +\clearpage \subsection{Interlayer degree correlation functions} @@ -204,6 +212,7 @@ power-law. \input{./latex/structure/correlations/knn_q_from_degrees.tex} %% \input{./latex/structure/correlations/knn_q_from_degrees_log.tex} \input{./latex/structure/correlations/fit_knn.tex} +\clearpage \chapter{Models of multi-layer networks} @@ -215,6 +224,7 @@ power-law. \input{./latex/models/nullmodels/model_MDM.tex} \input{./latex/models/nullmodels/model_MSM.tex} \input{./latex/models/nullmodels/model_layer_growth.tex} +\clearpage \section{Growing multiplex networks} @@ -226,15 +236,18 @@ power-law. \input{./latex/models/growth/nibilab_linear_delay_mix.tex} \input{./latex/models/growth/nibilab_linear_random_times.tex} %%\input{./latex/models/growth/nibilab_semilinear.tex} +\clearpage \subsection{Non-linear preferential attachment} \input{./latex/models/growth/nibilab_nonlinear.tex} +\clearpage \subsection{Utilities} \input{./latex/models/growth/node_deg_over_time.tex} +\clearpage \section{Multiplex networks with inter-layer degree correlations} @@ -242,6 +255,7 @@ power-law. \input{./latex/models/correlations/tune_rho.tex} \input{./latex/models/correlations/tune_qnn_adaptive.tex} +\clearpage \chapter{Dynamics on multi-layer networks} @@ -249,17 +263,20 @@ power-law. \section{Interacting opinions - Multilayer ising model} \input{./latex/dynamics/Ising/multiplex_ising.tex} +\clearpage \section{Biased random walks} \subsection{Stationary distribution} \input{./latex/dynamics/randomwalks/statdistr2.tex} +\clearpage \subsection{Entropy rate} \input{./latex/dynamics/randomwalks/entropyrate2add.tex} \input{./latex/dynamics/randomwalks/entropyrate2mult.tex} \input{./latex/dynamics/randomwalks/entropyrate2int.tex} +\clearpage \end{document} |